Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq4678 167 3e-36
seq4198 84.2 3e-11
>seq4678
Length=1229792
Score = 167 bits (184), Expect = 3e-36
Identities = 305/447 (68%), Gaps = 0/447 (0%)
Strand=Plus/Plus
Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291
|| || || ||| |||||| |||||||| ||||| ||||| || ||| |||||||
Sbjct 1146123 TACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCATG 1146182
Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGA 127351
|| | || || ||||| | ||| | || || ||| || | || || ||||||
Sbjct 1146183 AAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGACGA 1146242
Query 127352 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 127411
|| | || |||||||||||| |||||| ||| ||||||| ||||| || |||
Sbjct 1146243 TCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAACC 1146302
Query 127412 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGA 127471
|| || || || || |||| ||| ||||||||||||||| || || | ||| ||
Sbjct 1146303 GGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGATG 1146362
Query 127472 ATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCTTGG 127531
|| || || |||| | | | || ||| | ||| ||||| || |
Sbjct 1146363 ATGCGCTCGCGCCTCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCACAG 1146422
Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591
|| |||||||| || |||||||| || ||||| |||||| || ||| ||||| || ||
Sbjct 1146423 TGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGCCG 1146482
Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651
|||||||||| ||||||||| | ||| ||| |||||| || ||||| ||
Sbjct 1146483 CGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGGCG 1146542
Query 127652 GCGAACGCAAATAGACGCTCGGCAAAG 127678
|| ||||||| | ||||| |||||
Sbjct 1146543 GCAAACGCAATGATGCGCTCCCCAAAG 1146569
>seq4198
Length=487851
Score = 84.2 bits (92), Expect = 3e-11
Identities = 248/374 (66%), Gaps = 10/374 (3%)
Strand=Plus/Plus
Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757
|| ||| || || ||||| || || || | || |||||| | ||| ||||| ||
Sbjct 57779 CTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGT 57838
Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817
|| || || | | | ||| | | | || || |||||||||||| || | ||
Sbjct 57839 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 57898
Query 12818 ATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATAC-CACCCGCACTGCGTTGCTTAC 12876
|| | || || || || |||||||| || | || | ||| |||| || || ||
Sbjct 57899 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 57957
Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACG--GTTGA-TTTTCACGGGCAACTT 12933
| ||||| |||||||| |||||||| | || || | | ||| |||| || | ||
Sbjct 57958 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 58014
Query 12934 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 12993
| || || || ||||| | ||||| ||||| || ||||| |||||||| | ||
Sbjct 58015 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 58074
Query 12994 CGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052
| | | || | | ||| || || |||| |||||| || ||||| ||||| | |||||
Sbjct 58075 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 58133
Query 13053 TTCCCCGTCCCTGG 13066
|| || || || ||
Sbjct 58134 TTACCAGTGCCCGG 58147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613467774493560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |