Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4678 167 3e-36 seq4198 84.2 3e-11 >seq4678 Length=1229792 Score = 167 bits (184), Expect = 3e-36 Identities = 305/447 (68%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || ||| |||||| |||||||| ||||| ||||| || ||| ||||||| Sbjct 1146123 TACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCATG 1146182 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGA 127351 || | || || ||||| | ||| | || || ||| || | || || |||||| Sbjct 1146183 AAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGACGA 1146242 Query 127352 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 127411 || | || |||||||||||| |||||| ||| ||||||| ||||| || ||| Sbjct 1146243 TCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAACC 1146302 Query 127412 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGA 127471 || || || || || |||| ||| ||||||||||||||| || || | ||| || Sbjct 1146303 GGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGATG 1146362 Query 127472 ATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCTTGG 127531 || || || |||| | | | || ||| | ||| ||||| || | Sbjct 1146363 ATGCGCTCGCGCCTCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCACAG 1146422 Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || |||||||| || |||||||| || ||||| |||||| || ||| ||||| || || Sbjct 1146423 TGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGCCG 1146482 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||||| ||||||||| | ||| ||| |||||| || ||||| || Sbjct 1146483 CGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGGCG 1146542 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAG 127678 || ||||||| | ||||| ||||| Sbjct 1146543 GCAAACGCAATGATGCGCTCCCCAAAG 1146569 >seq4198 Length=487851 Score = 84.2 bits (92), Expect = 3e-11 Identities = 248/374 (66%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||| || || ||||| || || || | || |||||| | ||| ||||| || Sbjct 57779 CTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGT 57838 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 || || || | | | ||| | | | || || |||||||||||| || | || Sbjct 57839 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 57898 Query 12818 ATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATAC-CACCCGCACTGCGTTGCTTAC 12876 || | || || || || |||||||| || | || | ||| |||| || || || Sbjct 57899 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 57957 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACG--GTTGA-TTTTCACGGGCAACTT 12933 | ||||| |||||||| |||||||| | || || | | ||| |||| || | || Sbjct 57958 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 58014 Query 12934 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 12993 | || || || ||||| | ||||| ||||| || ||||| |||||||| | || Sbjct 58015 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 58074 Query 12994 CGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052 | | | || | | ||| || || |||| |||||| || ||||| ||||| | ||||| Sbjct 58075 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 58133 Query 13053 TTCCCCGTCCCTGG 13066 || || || || || Sbjct 58134 TTACCAGTGCCCGG 58147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613467774493560