Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4765 197 2e-45 seq4678 192 9e-44 >seq4765 Length=3541379 Score = 197 bits (218), Expect = 2e-45 Identities = 460/687 (67%), Gaps = 10/687 (1%) Strand=Plus/Minus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891 ||| | ||||||| || |||||||| ||||| || | || ||| | | | || || | Sbjct 3010808 CCTGCTTCTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAAT 3010749 Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951 |||| ||||| || ||||| || |||| ||| | ||| ||||| | ||| |||| Sbjct 3010748 ACATCCCGGTTTTAAGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCAT 3010689 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGA 204010 |||||| || |||| |||||||| | || || || || ||||| ||| || || ||| Sbjct 3010688 AGTTGGGCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGAT-AAACGCACCGCGA 3010630 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070 ||||||||||| || || ||| ||| || |||||||| ||||||||| ||| || Sbjct 3010629 TCTGCGGCCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCG 3010570 Query 204071 CTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCT- 204129 | | || || | | || || ||| ||||| | || || | ||| Sbjct 3010569 CGAACATTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGA-TCTG 3010511 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 || || | || || |||||| | ||| | | || ||||||| ||||| |||| Sbjct 3010510 GTTCTTCATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTT 3010451 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 || | ||| || || ||||| || || | || || | | || ||||| | || || Sbjct 3010450 GACCACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTC 3010391 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 ||| | ||||||||||| | ||||| || ||| |||||||||||||| |||| ||| Sbjct 3010390 GAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAG 3010331 Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---GTG 204366 ||| ||||| | || |||| ||| | || | |||||| | |||||| | | Sbjct 3010330 CAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAG 3010271 Query 204367 CATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 ||| ||||| | | ||||||||||| |||| | ||| || | || || ||||| Sbjct 3010270 GTTCG---TGGGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCT 3010214 Query 204427 GCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGC 204486 ||||| ||| || ||| || || | | ||||| | || ||| ||| ||| Sbjct 3010213 GCCCTCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGC 3010154 Query 204487 GTGATAGTACATGGTCTCAAAGATCTG 204513 ||| || || || ||||||||||| Sbjct 3010153 TCCATAATATATCGTTTCAAAGATCTG 3010127 Score = 123 bits (136), Expect = 4e-23 Identities = 465/719 (65%), Gaps = 14/719 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| ||||| || ||||||| || | |||||| | ||||||| |||||| || Sbjct 3009841 CTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCT 3009782 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||| | ||| || | |||||| | | |||| |||| | || |||||| ||| | || Sbjct 3009781 CTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTC 3009722 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGC---TTCACGTACATCCCTTGAG 205058 | || || | ||||| |||||| ||| | || | | ||||| | | Sbjct 3009721 GATGA-TGGCGAACCACAGGGACTGAGCCTTAACTGTCCGATTGGCCTT--TCCCTCG-G 3009666 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGAC 205118 ||||||||| ||||||| | |||| || || |||| ||| ||| || |||| Sbjct 3009665 CCTCGTATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGAC 3009606 Query 205119 ATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178 | || | || ||||| || ||||| | | || | | || | || |||||| || | Sbjct 3009605 ACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGAT 3009546 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 || ||||| ||| | || || ||||| || || | | | | || | || ||||| Sbjct 3009545 CGGGTATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCT 3009486 Query 205239 TTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297 |||||| |||| || || | | || | |||||| ||||| || | | ||| | Sbjct 3009485 TTTTCAGTTCCAAG-AACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAG 3009427 Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357 || || |||| |||| |||||||||||||| |||| || |||||| |||||| Sbjct 3009426 GCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGC 3009367 Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCC 205417 ||||| || || || || |||| ||| || || |||| |||| | ||| | || Sbjct 3009366 AGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCA 3009307 Query 205418 CTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACT 205475 | | | |||| || | |||||| ||||| | |||||| |||| ||| || | Sbjct 3009306 CGGATGCAATGGACAT--TCAGGCCAATGCCGCCCGCCGACTTGGAGATCATGGCACAGT 3009249 Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACG 205535 || || | | | |||||| |||| ||||| | || |||| || |||| | Sbjct 3009248 GTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGG 3009189 Query 205536 AAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAG 205594 | | |||| | ||| ||| | ||| ||| || ||||| |||||| ||||| Sbjct 3009188 ACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTGTGTGAAG 3009130 >seq4678 Length=1229792 Score = 192 bits (212), Expect = 9e-44 Identities = 537/811 (66%), Gaps = 26/811 (3%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| |||||||| || |||||||||||||| |||| || || |||||||| ||| Sbjct 1146131 CACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCATGAAGTTGAA 1146190 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || ||||| || ||| ||| | || || | |||||| | || ||||| Sbjct 1146191 CGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGACGATCGGCCAC 1146250 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 ||| || ||||| || | ||||| | |||||||| || || | ||| |||| || || | Sbjct 1146251 AAACTCAATGTA-CTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAACCGGCAGGG 1146309 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGT 159880 | || | || ||||||| |||||| || || || ||| | |||| ||| || || Sbjct 1146310 CATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCT-CGATGATGCGC 1146368 Query 159881 TCGTACCCCGG--CTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938 ||| || ||| ||| | | ||| || |||| || ||||||||| |||| Sbjct 1146369 TCGCGCCTCGGTCGCTGCACCAGATG-----CTGGAACATCAGCACCGCAAAGTCACAGT 1146423 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 |||| ||||| || || ||||| | ||| ||||| | | | | || ||||| | || | Sbjct 1146424 GCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGCCGC 1146483 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCG 160058 || || ||||| ||||||| ||||| ||||| || || || ||||| ||||| | Sbjct 1146484 GCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGGCGG 1146543 Query 160059 CAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCC 160118 ||||||| | || | ||| ||||| ||| || | | |||| ||||| Sbjct 1146544 CAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCCAGGACAGGGCCC 1146603 Query 160119 ATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCGTTAAACA-ATCTGTC 160173 | |||||| ||||| | || ||||||| ||| | ||| || |||| || | || Sbjct 1146604 AGTCAGCC----TTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGATAT-TC 1146658 Query 160174 CTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCAC 160233 | ||| | ||| || ||| | |||||| |||||| || | ||||| Sbjct 1146659 CCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGCAC 1146718 Query 160234 ATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCT 160292 || || ||||| ||||| ||| || || | ||||| ||| ||| ||||||| Sbjct 1146719 GTTCTCCATGGCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGAT-CTGTACCTCCT 1146777 Query 160293 GTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCA 160352 | | || | | ||||||| | || || | || |||| ||| |||||||| |||| Sbjct 1146778 GGCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGGCCA 1146837 Query 160353 ACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGT 160412 ||| || |||||||| || | ||||| | || || | | ||||| || | | Sbjct 1146838 GCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGC---GATGCCAGTCGGTGAGAT 1146894 Query 160413 CTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 | | || ||| || ||||||||| || |||| Sbjct 1146895 CCTTGGACAAGTCCACCTCTTCCACGGTCCA 1146925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795104101338960