Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 197 2e-45
seq4678 192 9e-44
>seq4765
Length=3541379
Score = 197 bits (218), Expect = 2e-45
Identities = 460/687 (67%), Gaps = 10/687 (1%)
Strand=Plus/Minus
Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891
||| | ||||||| || |||||||| ||||| || | || ||| | | | || || |
Sbjct 3010808 CCTGCTTCTTGTCGACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAAT 3010749
Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951
|||| ||||| || ||||| || |||| ||| | ||| ||||| | ||| ||||
Sbjct 3010748 ACATCCCGGTTTTAAGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCAT 3010689
Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGA 204010
|||||| || |||| |||||||| | || || || || ||||| ||| || || |||
Sbjct 3010688 AGTTGGGCTCAGCCACATGAATGTTGAACGATTGACTCTGATCGAT-AAACGCACCGCGA 3010630
Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070
||||||||||| || || ||| ||| || |||||||| ||||||||| ||| ||
Sbjct 3010629 TCTGCGGCCATTTTAATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCG 3010570
Query 204071 CTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCT- 204129
| | || || | | || || ||| ||||| | || || | |||
Sbjct 3010569 CGAACATTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGA-TCTG 3010511
Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189
|| || | || || |||||| | ||| | | || ||||||| ||||| ||||
Sbjct 3010510 GTTCTTCATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTT 3010451
Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249
|| | ||| || || ||||| || || | || || | | || ||||| | || ||
Sbjct 3010450 GACCACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTC 3010391
Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309
||| | ||||||||||| | ||||| || ||| |||||||||||||| |||| |||
Sbjct 3010390 GAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAG 3010331
Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---GTG 204366
||| ||||| | || |||| ||| | || | |||||| | |||||| | |
Sbjct 3010330 CAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAG 3010271
Query 204367 CATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426
||| ||||| | | ||||||||||| |||| | ||| || | || || |||||
Sbjct 3010270 GTTCG---TGGGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCT 3010214
Query 204427 GCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGC 204486
||||| ||| || ||| || || | | ||||| | || ||| ||| |||
Sbjct 3010213 GCCCTCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGC 3010154
Query 204487 GTGATAGTACATGGTCTCAAAGATCTG 204513
||| || || || |||||||||||
Sbjct 3010153 TCCATAATATATCGTTTCAAAGATCTG 3010127
Score = 123 bits (136), Expect = 4e-23
Identities = 465/719 (65%), Gaps = 14/719 (2%)
Strand=Plus/Minus
Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942
||| ||||| || ||||||| || | |||||| | ||||||| |||||| ||
Sbjct 3009841 CTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCT 3009782
Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001
||| | ||| || | |||||| | | |||| |||| | || |||||| ||| | ||
Sbjct 3009781 CTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTC 3009722
Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGC---TTCACGTACATCCCTTGAG 205058
| || || | ||||| |||||| ||| | || | | ||||| | |
Sbjct 3009721 GATGA-TGGCGAACCACAGGGACTGAGCCTTAACTGTCCGATTGGCCTT--TCCCTCG-G 3009666
Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGAC 205118
||||||||| ||||||| | |||| || || |||| ||| ||| || ||||
Sbjct 3009665 CCTCGTATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGAC 3009606
Query 205119 ATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178
| || | || ||||| || ||||| | | || | | || | || |||||| || |
Sbjct 3009605 ACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGAT 3009546
Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238
|| ||||| ||| | || || ||||| || || | | | | || | || |||||
Sbjct 3009545 CGGGTATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCT 3009486
Query 205239 TTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297
|||||| |||| || || | | || | |||||| ||||| || | | ||| |
Sbjct 3009485 TTTTCAGTTCCAAG-AACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAG 3009427
Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357
|| || |||| |||| |||||||||||||| |||| || |||||| ||||||
Sbjct 3009426 GCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGC 3009367
Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCC 205417
||||| || || || || |||| ||| || || |||| |||| | ||| | ||
Sbjct 3009366 AGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCA 3009307
Query 205418 CTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACT 205475
| | | |||| || | |||||| ||||| | |||||| |||| ||| || |
Sbjct 3009306 CGGATGCAATGGACAT--TCAGGCCAATGCCGCCCGCCGACTTGGAGATCATGGCACAGT 3009249
Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACG 205535
|| || | | | |||||| |||| ||||| | || |||| || |||| |
Sbjct 3009248 GTTCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGG 3009189
Query 205536 AAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAG 205594
| | |||| | ||| ||| | ||| ||| || ||||| |||||| |||||
Sbjct 3009188 ACGAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTGTGTGAAG 3009130
>seq4678
Length=1229792
Score = 192 bits (212), Expect = 9e-44
Identities = 537/811 (66%), Gaps = 26/811 (3%)
Strand=Plus/Plus
Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702
||| |||||||| || |||||||||||||| |||| || || |||||||| |||
Sbjct 1146131 CACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCATGAAGTTGAA 1146190
Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762
|| ||||| || ||| ||| | || || | |||||| | || |||||
Sbjct 1146191 CGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGACGATCGGCCAC 1146250
Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821
||| || ||||| || | ||||| | |||||||| || || | ||| |||| || || |
Sbjct 1146251 AAACTCAATGTA-CTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAACCGGCAGGG 1146309
Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGT 159880
| || | || ||||||| |||||| || || || ||| | |||| ||| || ||
Sbjct 1146310 CATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCT-CGATGATGCGC 1146368
Query 159881 TCGTACCCCGG--CTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938
||| || ||| ||| | | ||| || |||| || ||||||||| ||||
Sbjct 1146369 TCGCGCCTCGGTCGCTGCACCAGATG-----CTGGAACATCAGCACCGCAAAGTCACAGT 1146423
Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998
|||| ||||| || || ||||| | ||| ||||| | | | | || ||||| | || |
Sbjct 1146424 GCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGCCGC 1146483
Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCG 160058
|| || ||||| ||||||| ||||| ||||| || || || ||||| ||||| |
Sbjct 1146484 GCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGGCGG 1146543
Query 160059 CAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCC 160118
||||||| | || | ||| ||||| ||| || | | |||| |||||
Sbjct 1146544 CAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCCAGGACAGGGCCC 1146603
Query 160119 ATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCGTTAAACA-ATCTGTC 160173
| |||||| ||||| | || ||||||| ||| | ||| || |||| || | ||
Sbjct 1146604 AGTCAGCC----TTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGATAT-TC 1146658
Query 160174 CTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCAC 160233
| ||| | ||| || ||| | |||||| |||||| || | |||||
Sbjct 1146659 CCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGCAC 1146718
Query 160234 ATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCT 160292
|| || ||||| ||||| ||| || || | ||||| ||| ||| |||||||
Sbjct 1146719 GTTCTCCATGGCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGAT-CTGTACCTCCT 1146777
Query 160293 GTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCA 160352
| | || | | ||||||| | || || | || |||| ||| |||||||| ||||
Sbjct 1146778 GGCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGGCCA 1146837
Query 160353 ACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGT 160412
||| || |||||||| || | ||||| | || || | | ||||| || | |
Sbjct 1146838 GCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGC---GATGCCAGTCGGTGAGAT 1146894
Query 160413 CTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443
| | || ||| || ||||||||| || ||||
Sbjct 1146895 CCTTGGACAAGTCCACCTCTTCCACGGTCCA 1146925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795104101338960
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