Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4644 150 2e-31 seq4863 136 4e-27 seq4810 129 7e-25 seq4765 98.7 1e-15 >seq4644 Length=1132839 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||||| ||||| || |||||| ||||| ||||||||||| Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || ||||||||||||||||| ||||| |||||||| || | || Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| |||||| ||| | || | | |||||| | ||||| Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACC 752355 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| || || ||||| || || |||||||| |||||| Sbjct 752354 TCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307 Score = 138 bits (152), Expect = 1e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || ||||||||||||||||| Sbjct 751814 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAA 751755 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| |||||| ||| | | Sbjct 751754 GATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 751695 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || |||| |||||||| || || |||| ||||| || Sbjct 751694 CTCAATGGTGTCCGAAGGTTCAACCTCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCAC 751635 Query 46582 AAAGATTTGCATTT 46595 |||||| ||||||| Sbjct 751634 AAAGATCTGCATTT 751621 Score = 132 bits (146), Expect = 5e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || ||||||||||||||||| Sbjct 752727 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAA 752668 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | ||||||||| ||| || ||| | | Sbjct 752667 GATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCTTGGATTTTGGCCTTCACATT 752608 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | ||||| |||| |||||||| || || ||||| || || || Sbjct 752607 CTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCAC 752548 Query 46582 AAAGATTTGCATT 46594 |||||| |||||| Sbjct 752547 AAAGATCTGCATT 752535 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || ||||||||||| ||||| Sbjct 752271 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAA 752212 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| |||||| ||| | | Sbjct 752211 GATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 752152 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | ||||| |||| |||||||| || || || || || || || Sbjct 752151 CTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCAC 752092 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 752091 GAAGATCTGCATT 752079 Score = 113 bits (124), Expect = 5e-20 Identities = 142/194 (73%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || || ||||||||||||||||| Sbjct 752043 CTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 751984 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| |||||| ||| | | Sbjct 751983 AATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 751924 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT-TTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| | ||||| |||| |||||||| ||| | || || || || | Sbjct 751923 CTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCA 751864 Query 46581 CAAAGATTTGCATT 46594 ||||||| |||||| Sbjct 751863 CAAAGATCTGCATT 751850 >seq4863 Length=1240122 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| ||||||||||| |||||||| | || || Sbjct 1064088 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 1064029 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||| || |||| |||||||| || | || | || |||||||||| Sbjct 1064028 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 1063969 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | ||||| | ||||| |||| |||||||| || Sbjct 1063968 GATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTT 1063909 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || ||||| || ||||| ||||| Sbjct 1063908 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879 >seq4810 Length=1195048 Score = 129 bits (142), Expect = 7e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| |||||| || |||||| ||||| ||||| ||||| | ||||| | Sbjct 316975 ACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCC 316916 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| ||||| || |||| ||||||||||| | || | || |||||| Sbjct 316915 GTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTT 316856 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| || | | |||||| | || || || | ||||| Sbjct 316855 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGAT 316796 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| |||| || || || ||||| ||||| Sbjct 316795 GGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| |||| || | || |||||| ||||| ||||| |||| Sbjct 316532 TGCCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGG 316473 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| |||| || |||||||| ||||| || |||| ||||||||||| | | Sbjct 316472 ACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGG 316413 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||||| || | | |||||| | || | Sbjct 316412 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGA 316353 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | ||||| || ||||| |||| || || || ||||||||||| ||| Sbjct 316352 CCTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCATGTTG 316300 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| |||| || | || |||||| ||||| |||||||| | Sbjct 316760 TGCCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAG 316701 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || |||||||| ||||| || |||| ||||||||||| | | Sbjct 316700 AGAGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGG 316641 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||||| || | | || ||| | || | Sbjct 316640 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGA 316581 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| |||| || || || ||||| ||||| Sbjct 316580 CCTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 >seq4765 Length=3541379 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| ||| |||||| || || || ||||| || || ||||| | || || Sbjct 2921417 CACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 2921476 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || |||| |||||||| || | || | | || |||||| Sbjct 2921477 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 2921536 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | | | ||||| || ||| || || | |||||||| || Sbjct 2921537 AATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTT 2921596 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||| || || || || ||||| ||||| ||| Sbjct 2921597 GCCCGTGAGGGTCTTCACGAAGATCTGCATCTTG 2921630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565202076367320