Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4678 421 7e-113 seq4810 145 8e-30 seq4863 136 4e-27 seq4644 136 4e-27 seq4765 118 1e-21 >seq4678 Length=1229792 Score = 421 bits (466), Expect = 7e-113 Identities = 597/827 (72%), Gaps = 12/827 (1%) Strand=Plus/Plus Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 ||||| ||||||||||| |||||||| || || || || || |||| || || | | | Sbjct 1146120 TGATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCC 1146179 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726 || || | || || || ||||||||| ||| || ||| ||||| ||||| Sbjct 1146180 ATGAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGA 1146239 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786 | |||||||| ||||| ||||| |||||||| || || || | || | |||| Sbjct 1146240 CGATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTA 1146299 Query 132787 ACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCC 132846 |||||||| || |||||||| || ||||| ||| | || |||||| || ||| || Sbjct 1146300 ACCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCG 1146359 Query 132847 CTAACGCGCGC-CGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA-AGCAAAGT 132904 | | |||| | ||| ||||| || ||||||| ||||| ||||||| |||| ||||||| Sbjct 1146360 ATGATGCGCTCGCGC-CTCGGTCGCTGCACCAGATGCTGGAACATC-AGCACCGCAAAGT 1146417 Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964 | || |||| ||||| || | ||| || || || ||| ||| ||||| || ||||| | Sbjct 1146418 CACAGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCA 1146477 Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024 ||||||| || || ||||| || |||| ||| || ||||| ||||| | |||||||| Sbjct 1146478 GGCCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGA 1146537 Query 133025 CGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCA 133084 |||| || || || | | |||||| || || |||| ||| | ||||||| || Sbjct 1146538 CGGCGGCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCCAGGACA 1146597 Query 133085 GCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGA 133144 | ||||| || ||||| || || |||||| || || ||||| || |||| | | Sbjct 1146598 GGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGA--TA 1146655 Query 133145 GTTTCTCT--TCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTG 133202 | | || | | | || | ||| |||||||| || ||||| ||||| || Sbjct 1146656 TTCCCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATG 1146715 Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262 ||||||||||||||||| || ||||| |||||||| || |||||| | ||| || || Sbjct 1146716 CACGTTCTCCATGGCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTACCTC 1146775 Query 133263 TTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321 || || ||| ||||| |||||||| |||||||| || || ||| |||||| || |||| Sbjct 1146776 CTG-GCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGG 1146834 Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTG- 133380 ||||||| || |||||| ||||| |||| || || | ||| | ||||||| | | | Sbjct 1146835 CCAGCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCG-GTGAGA 1146893 Query 133381 TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 |||||||||| ||||||||| || |||||||| || || |||||||| Sbjct 1146894 TCCTTGGACAAGTCCACCTCTTCCACGGTCCAGAAGGAGGCCTCGGC 1146940 >seq4810 Length=1195048 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || |||||| || || Sbjct 316760 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316819 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 316820 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 316878 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| |||| |||||| | ||| ||||| Sbjct 316879 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAA 316938 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || |||||||||| |||||| || | |||||| Sbjct 316939 CATCCAGAAGGAGTCCACTTTGCATTTGGTCCTGCGTCTGCGTGGCGGC 316987 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| || || | || ||||| || |||||| | || |||||| || Sbjct 316301 AACATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACCCTTGAGGTCGAGCCC 316360 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | |||| | || | || |||| ||||| ||||| |||||| | || Sbjct 316361 TCCGACACAATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGA 316419 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | || || || |||||||| |||| |||||||| ||| || Sbjct 316420 CCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTA 316479 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || || || ||||| |||||| || | || ||| Sbjct 316480 CAACATCCAGAAGGAGTCCACCCTTCACTTGGTTCTGCGTCTGCGTGGAGGC 316531 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || |||||| || || Sbjct 316532 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316591 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 316592 GATACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 316650 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| || | ||||| ||| |||||||| Sbjct 316651 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACTCTCTCTGACTACAA 316710 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||| || || ||||| |||||| || | || ||| Sbjct 316711 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCTGCGTCTGCGCGGAGGC 316759 >seq4863 Length=1240122 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| ||||| ||||||||| | || || ||| | | Sbjct 1063879 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCTTCG 1063938 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| |||||| | || || Sbjct 1063939 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 1063998 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| |||||||| || | ||||| || |||||||||| Sbjct 1063999 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 1064058 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| |||| ||||| |||||||| || || | || ||| Sbjct 1064059 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGC 1064106 >seq4644 Length=1132839 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || || || ||||||||| | || || ||| | | Sbjct 752307 AATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCTTGGAGGTGGAGCCATC 752366 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | || |||| ||||| |||||||| || | || || Sbjct 752367 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCA 752426 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 752427 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACAA 752486 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || |||||||||||||| ||| || | || || Sbjct 752487 CATCCAGAAGGAGTCAACCCTGCATTTGGTGCTCCGTCTGCGCGGAGG 752534 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || || ||||||||| | || || ||| | | Sbjct 752079 AATGCAGATCTTCGTGAAGACTCTTACCGGAAAGACCATCACCTTGGAGGTGGAGCCATC 752138 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | || |||| ||||| |||||||| || | || || Sbjct 752139 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCA 752198 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 752199 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACCCTCTCCGACTACAA 752258 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || |||||||| ||| || | || || Sbjct 752259 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGCGGAGG 752306 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || || || |||||||| | || || ||| | | Sbjct 752535 AATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACTCTGGAAGTGGAGCCATC 752594 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | ||||||| ||||| |||||||| ||| | || || Sbjct 752595 CGACACCATTGAGAATGTGAAGGCCAAAATCCAAGACAAGGAGGGAATACCCCCAGATCA 752654 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 752655 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACAA 752714 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || |||||||| ||| Sbjct 752715 CATCCAGAAGGAGTCAACTCTCCACTTGGTGCTCCGT 752751 Score = 122 bits (134), Expect = 9e-23 Identities = 165/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAA-ACCATCACCGTCGACGTCGAGGCCA 38301 |||||| || || || || || || || | ||| |||||||| | || || ||| | Sbjct 751850 AATGCAGATCTTTGTGAAGACTCTTACTCGGAAAGACCATCACTCTGGAAGTGGAGCCAT 751909 Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||||| | | | | | || | || |||| ||||| |||||||| || | || | Sbjct 751910 CCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATC 751969 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||||| ||| ||||| |||||||| || | ||||||||| ||||||| Sbjct 751970 AGCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCAGACTACA 752029 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || || |||||||| ||| || | || || Sbjct 752030 ACATCCAGAAGGAGTCAACTCTCCACTTGGTGCTCCGTCTGCGCGGAGG 752078 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || || || ||||| | || || || ||||||||| | || || || | Sbjct 751621 AAATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACCATCACCTTGGAGGTTGAACCTT 751680 Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 | |||| | | | | | || | || |||| ||||| |||||||| || | || | Sbjct 751681 CGGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATC 751740 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| ||||| |||||||| |||| ||||||||| |||||||| Sbjct 751741 AGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACA 751800 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || || |||||||| ||| || | || || Sbjct 751801 ACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGCGGAGG 751849 >seq4765 Length=3541379 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||||||||| |||||||| | || ||||| | Sbjct 2921629 AAGATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 2921570 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | |||| || || | |||||||| |||||||| | || Sbjct 2921569 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2921510 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || ||||| |||||||| || | ||||||||| ||||| Sbjct 2921509 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 2921450 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||||| | || |||| |||||||| || Sbjct 2921449 AACATTCAGAAGGAGTCTACCTTGCACTTGGTGCTCCG 2921412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500140657645440