Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq4678 421 7e-113
seq4810 145 8e-30
seq4863 136 4e-27
seq4644 136 4e-27
seq4765 118 1e-21
>seq4678
Length=1229792
Score = 421 bits (466), Expect = 7e-113
Identities = 597/827 (72%), Gaps = 12/827 (1%)
Strand=Plus/Plus
Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666
||||| ||||||||||| |||||||| || || || || || |||| || || | | |
Sbjct 1146120 TGATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCC 1146179
Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726
|| || | || || || ||||||||| ||| || ||| ||||| |||||
Sbjct 1146180 ATGAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAGA 1146239
Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786
| |||||||| ||||| ||||| |||||||| || || || | || | ||||
Sbjct 1146240 CGATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTA 1146299
Query 132787 ACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCC 132846
|||||||| || |||||||| || ||||| ||| | || |||||| || ||| ||
Sbjct 1146300 ACCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCG 1146359
Query 132847 CTAACGCGCGC-CGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA-AGCAAAGT 132904
| | |||| | ||| ||||| || ||||||| ||||| ||||||| |||| |||||||
Sbjct 1146360 ATGATGCGCTCGCGC-CTCGGTCGCTGCACCAGATGCTGGAACATC-AGCACCGCAAAGT 1146417
Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964
| || |||| ||||| || | ||| || || || ||| ||| ||||| || ||||| |
Sbjct 1146418 CACAGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCA 1146477
Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024
||||||| || || ||||| || |||| ||| || ||||| ||||| | ||||||||
Sbjct 1146478 GGCCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGA 1146537
Query 133025 CGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCA 133084
|||| || || || | | |||||| || || |||| ||| | ||||||| ||
Sbjct 1146538 CGGCGGCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCCAGGACA 1146597
Query 133085 GCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGA 133144
| ||||| || ||||| || || |||||| || || ||||| || |||| | |
Sbjct 1146598 GGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACAGA--TA 1146655
Query 133145 GTTTCTCT--TCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTG 133202
| | || | | | || | ||| |||||||| || ||||| ||||| ||
Sbjct 1146656 TTCCCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATG 1146715
Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262
||||||||||||||||| || ||||| |||||||| || |||||| | ||| || ||
Sbjct 1146716 CACGTTCTCCATGGCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTACCTC 1146775
Query 133263 TTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321
|| || ||| ||||| |||||||| |||||||| || || ||| |||||| || ||||
Sbjct 1146776 CTG-GCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAGG 1146834
Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTG- 133380
||||||| || |||||| ||||| |||| || || | ||| | ||||||| | | |
Sbjct 1146835 CCAGCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCG-GTGAGA 1146893
Query 133381 TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427
|||||||||| ||||||||| || |||||||| || || ||||||||
Sbjct 1146894 TCCTTGGACAAGTCCACCTCTTCCACGGTCCAGAAGGAGGCCTCGGC 1146940
>seq4810
Length=1195048
Score = 145 bits (160), Expect = 8e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||| ||||||||| | || |||||| || ||
Sbjct 316760 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316819
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| ||||| |||||| | |||||
Sbjct 316820 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 316878
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || |||||||| |||| |||||| | ||| |||||
Sbjct 316879 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAA 316938
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| | || |||||||||| |||||| || | ||||||
Sbjct 316939 CATCCAGAAGGAGTCCACTTTGCATTTGGTCCTGCGTCTGCGTGGCGGC 316987
Score = 136 bits (150), Expect = 4e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| |||||||| ||||| || || | || ||||| || |||||| | || |||||| ||
Sbjct 316301 AACATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACCCTTGAGGTCGAGCCC 316360
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | |||| | || | || |||| ||||| ||||| |||||| | ||
Sbjct 316361 TCCGACACAATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGA 316419
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| || || | || || || |||||||| |||| |||||||| ||| ||
Sbjct 316420 CCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTA 316479
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||||||| ||||| | || || || ||||| |||||| || | || |||
Sbjct 316480 CAACATCCAGAAGGAGTCCACCCTTCACTTGGTTCTGCGTCTGCGTGGAGGC 316531
Score = 136 bits (150), Expect = 4e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||| ||||||||| | || |||||| || ||
Sbjct 316532 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 316591
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || | || |||| ||||| ||||| |||||| | |||||
Sbjct 316592 GATACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 316650
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || |||||||| || | ||||| ||| ||||||||
Sbjct 316651 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACTCTCTCTGACTACAA 316710
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| |||| || || ||||| |||||| || | || |||
Sbjct 316711 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCTGCGTCTGCGCGGAGGC 316759
>seq4863
Length=1240122
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| ||||| ||||| ||||||||| | || || ||| | |
Sbjct 1063879 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCTTCG 1063938
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| |||||| | || ||
Sbjct 1063939 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 1063998
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || ||||| |||||||| || | ||||| || ||||||||||
Sbjct 1063999 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 1064058
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| ||||| |||| ||||| |||||||| || || | || |||
Sbjct 1064059 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGC 1064106
>seq4644
Length=1132839
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || || || || || || || ||||||||| | || || ||| | |
Sbjct 752307 AATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCTTGGAGGTGGAGCCATC 752366
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||||| | | | | | || | || |||| ||||| |||||||| || | || ||
Sbjct 752367 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCA 752426
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| ||||| |||||||| |||| ||||||||| |||||||||
Sbjct 752427 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACAA 752486
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || |||||||||||||| ||| || | || ||
Sbjct 752487 CATCCAGAAGGAGTCAACCCTGCATTTGGTGCTCCGTCTGCGCGGAGG 752534
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||||| || || || || || || ||||||||| | || || ||| | |
Sbjct 752079 AATGCAGATCTTCGTGAAGACTCTTACCGGAAAGACCATCACCTTGGAGGTGGAGCCATC 752138
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||||| | | | | | || | || |||| ||||| |||||||| || | || ||
Sbjct 752139 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCA 752198
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| ||||| |||||||| |||| ||||||||| |||||||||
Sbjct 752199 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACCCTCTCCGACTACAA 752258
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || || || |||||||| ||| || | || ||
Sbjct 752259 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGCGGAGG 752306
Score = 131 bits (144), Expect = 2e-25
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || || || || || || || |||||||| | || || ||| | |
Sbjct 752535 AATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACTCTGGAAGTGGAGCCATC 752594
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||||| | | | | | || | ||||||| ||||| |||||||| ||| | || ||
Sbjct 752595 CGACACCATTGAGAATGTGAAGGCCAAAATCCAAGACAAGGAGGGAATACCCCCAGATCA 752654
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| ||||| |||||||| |||| ||||||||| |||||||||
Sbjct 752655 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACAA 752714
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| ||||| | || || || |||||||| |||
Sbjct 752715 CATCCAGAAGGAGTCAACTCTCCACTTGGTGCTCCGT 752751
Score = 122 bits (134), Expect = 9e-23
Identities = 165/229 (72%), Gaps = 1/229 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAA-ACCATCACCGTCGACGTCGAGGCCA 38301
|||||| || || || || || || || | ||| |||||||| | || || ||| |
Sbjct 751850 AATGCAGATCTTTGTGAAGACTCTTACTCGGAAAGACCATCACTCTGGAAGTGGAGCCAT 751909
Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||||| | | | | | || | || |||| ||||| |||||||| || | || |
Sbjct 751910 CCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATC 751969
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| ||||||| ||| ||||| |||||||| || | ||||||||| |||||||
Sbjct 751970 AGCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCAGACTACA 752029
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||| ||||| | || || || |||||||| ||| || | || ||
Sbjct 752030 ACATCCAGAAGGAGTCAACTCTCCACTTGGTGCTCCGTCTGCGCGGAGG 752078
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301
||||||| || || || ||||| | || || || ||||||||| | || || || |
Sbjct 751621 AAATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACCATCACCTTGGAGGTTGAACCTT 751680
Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
| |||| | | | | | || | || |||| ||||| |||||||| || | || |
Sbjct 751681 CGGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATC 751740
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | || | ||| ||||| |||||||| |||| ||||||||| ||||||||
Sbjct 751741 AGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACA 751800
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||| ||||| | || || || |||||||| ||| || | || ||
Sbjct 751801 ACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGCGGAGG 751849
>seq4765
Length=3541379
Score = 118 bits (130), Expect = 1e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || ||||||||||| |||||||| | || ||||| |
Sbjct 2921629 AAGATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 2921570
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | ||| | |||| || || | |||||||| |||||||| | ||
Sbjct 2921569 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2921510
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | || ||||| |||||||| || | ||||||||| |||||
Sbjct 2921509 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 2921450
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| || ||||| | || |||| |||||||| ||
Sbjct 2921449 AACATTCAGAAGGAGTCTACCTTGCACTTGGTGCTCCG 2921412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500140657645440
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