Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5094 196 2e-44 seq4765 89.7 2e-12 >seq5094 Length=366253 Score = 196 bits (216), Expect = 2e-44 Identities = 232/313 (74%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||| | | ||||| ||||||||||| ||||| || |||||||| ||||| ||||| || Sbjct 124279 GTTAGTCAAGCAGTTATTACTGTTCCTGCTTACTTTAATGATGCTCAACGTCAAGCTACC 124338 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || | ||||| || | ||||| ||||||||||||||||||| ||| Sbjct 124339 AAAGATGCCGGTAAAATTGCCGGACTTGATGTTAAAAGAATTATTAATGAACCTACTGCA 124398 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 ||| | || |||||||| ||| || |||||| | ||| |||||| || ||||| Sbjct 124399 GCTTCACTTGCATATGGTTTAGATAA---AAAAGACAAAGATGAAAAA---ATCTTAGTT 124452 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 | |||||| |||||||| ||| |||| |||||| ||| | | | ||||| || || Sbjct 124453 TATGATTTAGGTGGAGGTACTTTTGATGTTTCTGTCCTTGAATTAGGGGATGGAGTCTTC 124512 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATT 451612 |||| |||| ||||||||||| || |||| || || ||| | ||||| ||| Sbjct 124513 CAAGTTCTTTCAACTAATGGTGATACCCACTTAGGTGGAGATGATTTCGATAAGAGAATC 124572 Query 451613 GTGGAATGGTTGA 451625 |||| ||||||| Sbjct 124573 ATGGACTGGTTGA 124585 >seq4765 Length=3541379 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || || |||||||| || ||| | || Sbjct 2921626 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 2921567 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 2921566 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 2921507 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || |||||||| | || | | || ||||| Sbjct 2921506 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 2921447 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || | ||||| || Sbjct 2921446 ATTCAGAAGGAGTCTACCTTGCACTTGGT 2921418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975588261281228