Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5094 150 1e-30 seq4998 129 4e-24 seq4837 93.3 3e-13 >seq5094 Length=366253 Score = 150 bits (166), Expect = 1e-30 Identities = 181/241 (75%), Gaps = 19/241 (8%) Strand=Plus/Minus Query 518072 ACTTGGAAAAGTCCATC------TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCA 518125 |||||||| | |||||| |||||| |||| || |||||| || || ||| Sbjct 124517 ACTTGGAAGACTCCATCCCCTAATTCAAG-GACAGAA-----ACATCAAAAGTACCTCCA 124464 Query 518126 CCCATATCAAAAA-TAAG-TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 518183 || | |||| ||| |||| | ||||| ||||||||| ||||||| | |||||| | Sbjct 124463 CCTAAATCATAAACTAAGATTTTTTCAT--CTTTGTCTT---TTTTATCTAAACCATATG 124409 Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243 ||| | ||| ||||| ||||||||||||||||| ||||| ||| || |||||| | | Sbjct 124408 CAAGTGAAGCTGCAGTAGGTTCATTAATAATTCTTTTAACATCAAGTCCGGCAATTTTAC 124349 Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303 | |||||||| || ||||| | ||| | ||| ||||| || ||||||||||||||||| | Sbjct 124348 CGGCATCTTTGGTAGCTTGACGTTGAGCATCATTAAAGTAAGCAGGAACAGTAATAACTG 124289 Query 518304 C 518304 | Sbjct 124288 C 124288 Score = 107 bits (118), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 18/223 (8%) Strand=Plus/Minus Query 322163 GAAACATCTAAAGTCCCAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttA 322222 |||||||| ||||| || | ||||| |||||||| | || |||||| Sbjct 124484 GAAACATCAAAAGTACCTCCACCTAAATCATAAACTA-------------AGATTTTTTC 124438 Query 322223 TTCCATTTTTCACTTC---CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATT 322279 || ||| || || ||||||| |||||||| | |||||||| ||||||||||| Sbjct 124437 ATC--TTTGTCTTTTTTATCTAAACCATATGCAAGTGAAGCTGCAGTAGGTTCATTAATA 124380 Query 322280 ATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCG 322339 ||| | |||||| | || ||||||||| | | ||| || ||||| | || || Sbjct 124379 ATTCTTTTAACATCAAGTCCGGCAATTTTACCGGCATCTTTGGTAGCTTGACGTTGAGCA 124320 Query 322340 TCATTAAAATATGCTGGTACAGTAATAACTGCTTTATTAATAG 322382 |||||||| || || || |||||||||||||||| | ||| || Sbjct 124319 TCATTAAAGTAAGCAGGAACAGTAATAACTGCTTGACTAACAG 124277 >seq4998 Length=2541160 Score = 129 bits (142), Expect = 4e-24 Identities = 551/866 (64%), Gaps = 6/866 (1%) Strand=Plus/Minus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 |||| |||| ||||||| ||| || | ||||| | | || || || ||||| || | Sbjct 427667 AATCGGTTCCCTCGAACAGAGAGTCGATCTCAATGCTGGCCTGGGTGGAGGAAGAGAGGG 427608 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 517968 || || ||||| || || || || | || | || | ||| ||| ||| | | Sbjct 427607 TGCGCTTTGCACGCTCGCAGGCAGTGCGCAGACGACGCAGGGCAC--GCTTGTTGGTGGT 427550 Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028 || ||| | || | || | |||||| || | || | || || ||||| || || Sbjct 427549 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACGAAATGCGTGACCAGACGGTTGTC 427490 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||||| || || ||||| | |||| || | || | | || | || | || || Sbjct 427489 GAAATCCTCGCCACCCAAATGGGTATCACCGGCGGTGGACTTGACCTCAAAGATGCCGTC 427430 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 || | |||| || | ||||| ||| || ||||||| ||| || || || || || Sbjct 427429 GTCGATGGACAGAATGGACACATCGAAGGTGCCGCCACCCAGATCGAAGATGAGAACGTT 427370 Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 || | || || || ||||| || |||| || ||||| || || || || Sbjct 427369 GCGCTCGCCAACAGCCTTCTTGTCCAGACCGTAGGCAATGGCCGCAGCCGTGGGCTCGTT 427310 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 ||| || | | ||||| ||||| || || |||| ||||| || ||||| || | || Sbjct 427309 AATGATACGAAGCACATTCAGACCGGCGATGGTTCCGGCATCCTTGGTGGCCTGACGCTG 427250 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 || ||||| || || || || || || || || || | || || || || | ||| Sbjct 427249 GGAGTCGTTGAAGTAGGCCGGCACGGTGATGACCGCGTTGGTCACAGTCTTGCCCAGATA 427190 Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388 || || || | ||||| || | | | ||| || || || | || |||||| | Sbjct 427189 GGCCTCGGCAGTCTCCTTCATCTTGGTGAGCACCATCGAGGAGATCTCCTC-GGGGAAGA 427131 Query 518389 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 518447 | ||| || | | || | || || | | || || | |||| | | || Sbjct 427130 AGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATTTTGGGCTTGCCATCAACGCTGACAA 427071 Query 518448 CTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 518507 | | || ||||||| ||||| || || || || ||| | || | | |||| Sbjct 427070 CCTCGAAGGGCCAGTGCTTCATGTCAGACTGCACGGCAGAGTCGTCGAACTTGCGGCCAA 427011 Query 518508 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTG 518567 | | || || ||||| || || || | ||| || || ||||| | || | ||||| | Sbjct 427010 TGAGACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATTGCCACCTGGTTCTTGGCGG 426951 Query 518568 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 518627 |||| || |||||| | || || || || || | |||||| ||||| || || ||||||| Sbjct 426950 CATCGCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGTGTGGTACGATTAC 426891 Query 518628 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687 | || || || || || || || || || |||| || | || || || || | | Sbjct 426890 CCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACTCCCACGCACGAGTAGG 426831 Query 518688 TTGTTCCTAAATCAATACCAATAGCA 518713 | || || ||||||||||||| |||| Sbjct 426830 TGGTGCCCAAATCAATACCAACAGCA 426805 >seq4837 Length=1611981 Score = 93.3 bits (102), Expect = 3e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| ||| || ||||||| ||| || | || |||||| | || | | | || Sbjct 528708 ACATCGAAGGTACCGCCACCCAGATCGAACACCAGCACATTCTTCTC---GCCCTCCTTC 528764 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || ||||| || |||| ||| |||||||| ||||| || || || | || |||| Sbjct 528765 TTGTCCAGACCGTAGGCAATAGCCGCAGCAGTCGGTTCGTTGATGATGCGCATCACATGG 528824 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||||||||||| || ||||| || || || || | || | |||||| || || || Sbjct 528825 AGACCAGCAATCACACCGGCATCCTTGGTCGCCTGACGCTGGGCATCGTTGAAGTAGGCC 528884 Query 518288 GGAACAGTAATAACGGCATCAGTTA-CTTCTT 518318 || ||||| | ||| |||| || | |||||| Sbjct 528885 GGGACAGTGACAACAGCATGGGTAACCTTCTT 528916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780567286645546