Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq5094 150 1e-30
seq4998 129 4e-24
seq4837 93.3 3e-13
>seq5094
Length=366253
Score = 150 bits (166), Expect = 1e-30
Identities = 181/241 (75%), Gaps = 19/241 (8%)
Strand=Plus/Minus
Query 518072 ACTTGGAAAAGTCCATC------TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCA 518125
|||||||| | |||||| |||||| |||| || |||||| || || |||
Sbjct 124517 ACTTGGAAGACTCCATCCCCTAATTCAAG-GACAGAA-----ACATCAAAAGTACCTCCA 124464
Query 518126 CCCATATCAAAAA-TAAG-TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 518183
|| | |||| ||| |||| | ||||| ||||||||| ||||||| | |||||| |
Sbjct 124463 CCTAAATCATAAACTAAGATTTTTTCAT--CTTTGTCTT---TTTTATCTAAACCATATG 124409
Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243
||| | ||| ||||| ||||||||||||||||| ||||| ||| || |||||| | |
Sbjct 124408 CAAGTGAAGCTGCAGTAGGTTCATTAATAATTCTTTTAACATCAAGTCCGGCAATTTTAC 124349
Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303
| |||||||| || ||||| | ||| | ||| ||||| || ||||||||||||||||| |
Sbjct 124348 CGGCATCTTTGGTAGCTTGACGTTGAGCATCATTAAAGTAAGCAGGAACAGTAATAACTG 124289
Query 518304 C 518304
|
Sbjct 124288 C 124288
Score = 107 bits (118), Expect = 1e-17
Identities = 157/223 (70%), Gaps = 18/223 (8%)
Strand=Plus/Minus
Query 322163 GAAACATCTAAAGTCCCAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttA 322222
|||||||| ||||| || | ||||| |||||||| | || ||||||
Sbjct 124484 GAAACATCAAAAGTACCTCCACCTAAATCATAAACTA-------------AGATTTTTTC 124438
Query 322223 TTCCATTTTTCACTTC---CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATT 322279
|| ||| || || ||||||| |||||||| | |||||||| |||||||||||
Sbjct 124437 ATC--TTTGTCTTTTTTATCTAAACCATATGCAAGTGAAGCTGCAGTAGGTTCATTAATA 124380
Query 322280 ATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCG 322339
||| | |||||| | || ||||||||| | | ||| || ||||| | || ||
Sbjct 124379 ATTCTTTTAACATCAAGTCCGGCAATTTTACCGGCATCTTTGGTAGCTTGACGTTGAGCA 124320
Query 322340 TCATTAAAATATGCTGGTACAGTAATAACTGCTTTATTAATAG 322382
|||||||| || || || |||||||||||||||| | ||| ||
Sbjct 124319 TCATTAAAGTAAGCAGGAACAGTAATAACTGCTTGACTAACAG 124277
>seq4998
Length=2541160
Score = 129 bits (142), Expect = 4e-24
Identities = 551/866 (64%), Gaps = 6/866 (1%)
Strand=Plus/Minus
Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910
|||| |||| ||||||| ||| || | ||||| | | || || || ||||| || |
Sbjct 427667 AATCGGTTCCCTCGAACAGAGAGTCGATCTCAATGCTGGCCTGGGTGGAGGAAGAGAGGG 427608
Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 517968
|| || ||||| || || || || | || | || | ||| ||| ||| | |
Sbjct 427607 TGCGCTTTGCACGCTCGCAGGCAGTGCGCAGACGACGCAGGGCAC--GCTTGTTGGTGGT 427550
Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028
|| ||| | || | || | |||||| || | || | || || ||||| || ||
Sbjct 427549 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACGAAATGCGTGACCAGACGGTTGTC 427490
Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088
||||| || || ||||| | |||| || | || | | || | || | || ||
Sbjct 427489 GAAATCCTCGCCACCCAAATGGGTATCACCGGCGGTGGACTTGACCTCAAAGATGCCGTC 427430
Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148
|| | |||| || | ||||| ||| || ||||||| ||| || || || || ||
Sbjct 427429 GTCGATGGACAGAATGGACACATCGAAGGTGCCGCCACCCAGATCGAAGATGAGAACGTT 427370
Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208
|| | || || || ||||| || |||| || ||||| || || || ||
Sbjct 427369 GCGCTCGCCAACAGCCTTCTTGTCCAGACCGTAGGCAATGGCCGCAGCCGTGGGCTCGTT 427310
Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268
||| || | | ||||| ||||| || || |||| ||||| || ||||| || | ||
Sbjct 427309 AATGATACGAAGCACATTCAGACCGGCGATGGTTCCGGCATCCTTGGTGGCCTGACGCTG 427250
Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328
|| ||||| || || || || || || || || || | || || || || | |||
Sbjct 427249 GGAGTCGTTGAAGTAGGCCGGCACGGTGATGACCGCGTTGGTCACAGTCTTGCCCAGATA 427190
Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388
|| || || | ||||| || | | | ||| || || || | || |||||| |
Sbjct 427189 GGCCTCGGCAGTCTCCTTCATCTTGGTGAGCACCATCGAGGAGATCTCCTC-GGGGAAGA 427131
Query 518389 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 518447
| ||| || | | || | || || | | || || | |||| | | ||
Sbjct 427130 AGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATTTTGGGCTTGCCATCAACGCTGACAA 427071
Query 518448 CTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 518507
| | || ||||||| ||||| || || || || ||| | || | | ||||
Sbjct 427070 CCTCGAAGGGCCAGTGCTTCATGTCAGACTGCACGGCAGAGTCGTCGAACTTGCGGCCAA 427011
Query 518508 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTG 518567
| | || || ||||| || || || | ||| || || ||||| | || | ||||| |
Sbjct 427010 TGAGACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATTGCCACCTGGTTCTTGGCGG 426951
Query 518568 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 518627
|||| || |||||| | || || || || || | |||||| ||||| || || |||||||
Sbjct 426950 CATCGCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGTGTGGTACGATTAC 426891
Query 518628 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687
| || || || || || || || || || |||| || | || || || || | |
Sbjct 426890 CCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACTCCCACGCACGAGTAGG 426831
Query 518688 TTGTTCCTAAATCAATACCAATAGCA 518713
| || || ||||||||||||| ||||
Sbjct 426830 TGGTGCCCAAATCAATACCAACAGCA 426805
>seq4837
Length=1611981
Score = 93.3 bits (102), Expect = 3e-13
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167
||||| ||| || ||||||| ||| || | || |||||| | || | | | ||
Sbjct 528708 ACATCGAAGGTACCGCCACCCAGATCGAACACCAGCACATTCTTCTC---GCCCTCCTTC 528764
Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227
|| || ||||| || |||| ||| |||||||| ||||| || || || | || ||||
Sbjct 528765 TTGTCCAGACCGTAGGCAATAGCCGCAGCAGTCGGTTCGTTGATGATGCGCATCACATGG 528824
Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287
||||||||||| || ||||| || || || || | || | |||||| || || ||
Sbjct 528825 AGACCAGCAATCACACCGGCATCCTTGGTCGCCTGACGCTGGGCATCGTTGAAGTAGGCC 528884
Query 518288 GGAACAGTAATAACGGCATCAGTTA-CTTCTT 518318
|| ||||| | ||| |||| || | ||||||
Sbjct 528885 GGGACAGTGACAACAGCATGGGTAACCTTCTT 528916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780567286645546
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |