Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 183 4e-41
seq4198 96.9 4e-15
seq4779 84.2 3e-11
>seq4765
Length=3541379
Score = 183 bits (202), Expect = 4e-41
Identities = 977/1541 (63%), Gaps = 70/1541 (5%)
Strand=Plus/Minus
Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457
|| ||||| ||| || |||||||| || ||||| || ||||||||||| | ||| | ||
Sbjct 3010768 CGGCTTCGTGCGGAGGTAATACATCCCGGTTTTAAGGCCAGCCTTCCACGAGTAAAAGTG 3010709
Query 109458 CATTGAAGAGAGTTTGGAAAGTGTCGGACTCT-CCATAAACAAGTTCATCGACTGAGACT 109516
|| || | || ||| | || || ||| ||| | | ||| | ||| ||| ||
Sbjct 3010708 TATGGATGTCAGCTTGCCATA-GTTGGGCTCAGCCACATGAATGTTGAACGATTGACTCT 3010650
Query 109517 GATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCC 109576
||||||| || ||| ||||| || ||||| | ||| | | || || ||||
Sbjct 3010649 GATCGATAAACGCACCGCGATCTGCGGCCATTTTAATGGTGGATTTCACAGAGATCTCCC 3010590
Query 109577 AGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGC 109636
| || |||||||||| || | || | ||||||| || |||| || || |||||||
Sbjct 3010589 AAACCGTCTTGTACAGATCGCGAACATTCTGGGGAATGGCCTCGATATTCTGGATAGAGC 3010530
Query 109637 CACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGA 109693
||| | || | |||| | | |||||| || | ||| | | | || | |
Sbjct 3010529 CAC--GGCTGGAA-ATGATCTGGTTCTTCATGTCATCATCCCACAAGTCCAGCTCAGTTA 3010473
Query 109694 GATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGT 109753
|||| | || || | ||||||||| ||||| || | || ||| || |
Sbjct 3010472 GATCCCGCAATAGGTGATGGTTGACCACCTGGAATTCGCCGGAGAGAACGCGGCGTGTAT 3010413
Query 109754 AGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAG 109813
|||| || || ||||| || ||||| | || |||||||| | || || |||||||| |
Sbjct 3010412 AGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGATG 3010353
Query 109814 CTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACC----CGC 109869
| ||||||||||| |||| ||| ||| ||||| | || | |||| | | |
Sbjct 3010352 CCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTCCT 3010293
Query 109870 TCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTC-ACCAT--CCCACATA 109926
||| || |||| ||| || ||| | || || ||| | |||||||
Sbjct 3010292 TCA-GCTTTGC---CCAGTC-------CCAG--AGGTTCGTGGGTACCTTGTCCCACATG 3010246
Query 109927 TCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCA 109986
|| || || | |||| | || |||| | | | || |||| || ||
Sbjct 3010245 TCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATACGGGCCTTCG 3010186
Query 109987 ACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGA 110046
|||| ||||| || | || || || || ||| ||| || || ||||| || ||
Sbjct 3010185 ACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGATCTGT 3010126
Query 110047 GCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAA-AGAATAAACACATC 110105
||||| ||| | | ||| || | ||| |||| | | | || ||||| || ||||
Sbjct 3010125 TGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGA-ATCTCATCAGAATCAAGGCATC 3010067
Query 110106 CGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA-------GCGTC 110158
|| || |||||||| || | ||||||||||||||| |||| || || || ||
Sbjct 3010066 GGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTC 3010007
Query 110159 GAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218
|||| ||| ||| ||||| ||| || | | || |||||||| | |||||
Sbjct 3010006 CGGCAG-------GGGATAATAGTTGATGTCAATAATCTTGTTCAGATTCTTGGCCACAG 3009954
Query 110219 TCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACG--TTTTCGTCTCCTTATTGACATA 110276
|||| |||| || | || || | ||||| ||| |||||| | | | ||||
Sbjct 3009953 TCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGTCTTTTCG-GGCGTCACAAACATG 3009895
Query 110277 TTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTC 110336
|| |||||| || ||||| || ||||| || | ||||||| || ||| ||
Sbjct 3009894 TT----GAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGTACTC 3009839
Query 110337 CAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTT 110396
| ||||| || |||| ||| | ||| ||| |||| |||| |||||| ||
Sbjct 3009838 GACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTT 3009779
Query 110397 GGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAG 110456
|||||| |||||||| |||||||||| || | ||||| ||| ||| | || ||
Sbjct 3009778 CCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGAT 3009719
Query 110457 AATGGCCTTCCATACATCGGC--GGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCG 110514
||||| || ||| | | || || || || || || || |||||
Sbjct 3009718 GATGGCGAACC--ACAGGGACTGAGCCTTAACTGTCCGATTGGCCTTTCCCTCGGCCTCG 3009661
Query 110515 TACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG 110574
|| || ||||| | |||||| || | || ||||||| || || ||||
Sbjct 3009660 TATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTG 3009601
Query 110575 TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGA 110634
| || || | |||||||| ||| || | |||| || | |||||| || || || ||
Sbjct 3009600 TGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGT 3009541
Query 110635 ATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGT 110694
||||| | || |||| || || || |||| ||| || | || |||
Sbjct 3009540 ATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTC 3009481
Query 110695 AGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC- 110753
|| ||||| || || | || |||||||||||| || || | ||||| || | || ||
Sbjct 3009480 AGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAGGCACCG 3009421
Query 110754 -----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGC 110808
||| | || || |||||| || || || || |||||||| | |||
Sbjct 3009420 GGCCGCTT--GCCG-CCACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGCAGC 3009364
Query 110809 ATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTT---ATTGGCA 110865
|| |||| | |||| ||| |||||||| || | | |||| | ||||||
Sbjct 3009363 ATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCC---ACATATGGAAGTGCCCTTGGCA 3009307
Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTT 110906
|| ||| |||| || || ||||| || |||||| ||||
Sbjct 3009306 CGGATGCAATGGACATTCAGGCCAATGCCGCCCGCCGACTT 3009266
>seq4198
Length=487851
Score = 96.9 bits (106), Expect = 4e-15
Identities = 253/379 (67%), Gaps = 14/379 (4%)
Strand=Plus/Plus
Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555
|| || ||| ||||||||||| || || || | || ||||| | ||| ||||||
Sbjct 57776 AACCTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTT 57835
Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAG 11612
|| |||||||| | | | ||| |||||| || ||||| ||||| || ||
Sbjct 57836 GGTGGCGGCAATCAGGATCACGCCT---TCATTGCTTTCAAAACCATCCATCTCAACCAG 57892
Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC-ACCTGCCGAACGCT 11671
| |||||| | ||||| || |||||||| ||| | || | |||||| ||| |
Sbjct 57893 CATCTGGTTCAGTGTCTGCTCGCGCTCATCATTGCCGC-CACCCATACCTGCACCACGAT 57951
Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGT--TGGTTGGC-ACGTG 11728
||| || || ||||| ||||| ||||| | || || || || || ||
Sbjct 57952 GGCGACCAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC--- 58008
Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788
|||||||||| | ||||| ||||| || ||||||||||||||||| || || ||||
Sbjct 58009 CCTGTTCGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGT 58068
Query 11789 TTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848
| |||| || ||| || ||||| | ||||| || ||||| || || | |
Sbjct 58069 CGGAACCAGAGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACA 58128
Query 11849 GAGTCTTACCCGTACCAGG 11867
| || ||||| || || ||
Sbjct 58129 GGGTTTTACCAGTGCCCGG 58147
>seq4779
Length=3018021
Score = 84.2 bits (92), Expect = 3e-11
Identities = 197/291 (68%), Gaps = 10/291 (3%)
Strand=Plus/Plus
Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGT---TGGTTGGC 11723
||| ||| | || || || || ||||| |||||||| | ||| || || || |||
Sbjct 1109342 ACGTTTCCTGCCCACGGCATCGATCTCGTCGATGAAGAGGATGCAGGGAGCGTGTTTG-- 1109399
Query 11724 ACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAAC 11783
|| ||| |||| | || || ||||| | || || || |||||||| || |
Sbjct 1109400 -CGGGCCATGGCGAACATGTCGCGCACACGAGAGGGACCCACGCCCACGAACATTTCCAG 1109458
Query 11784 GAAGTTTGCGGCAGAACACTG-AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAG 11842
||| | | | || ||||| ||| ||||| ||||| | ||| || || |||| |
Sbjct 1109459 GAACTCGGATCCCGA-CACTGTAATAAAGGGCACATTCGCCTCGCCGGCAGTGGCCTTGG 1109517
Query 11843 CGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGG 11902
| || || || || ||||| ||||||| ||| | || | ||| || ||| |||||||
Sbjct 1109518 CCAGCAGCGTTTTGCCCGTGCCAGGTGGACCCGTAAGCATGGCTCCCTTGGGTATCTTGG 1109577
Query 11903 CA-CCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952
|| ||| || | | || ||| ||| ||||| ||||||| |||| ||||
Sbjct 1109578 CACCCAGATCGATA-TACTGCTGAGGGTTCTTCAGGAAGTTAACAAACTCC 1109627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588938150929800
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