Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4765 183 4e-41 seq4198 96.9 4e-15 seq4779 84.2 3e-11 >seq4765 Length=3541379 Score = 183 bits (202), Expect = 4e-41 Identities = 977/1541 (63%), Gaps = 70/1541 (5%) Strand=Plus/Minus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 || ||||| ||| || |||||||| || ||||| || ||||||||||| | ||| | || Sbjct 3010768 CGGCTTCGTGCGGAGGTAATACATCCCGGTTTTAAGGCCAGCCTTCCACGAGTAAAAGTG 3010709 Query 109458 CATTGAAGAGAGTTTGGAAAGTGTCGGACTCT-CCATAAACAAGTTCATCGACTGAGACT 109516 || || | || ||| | || || ||| ||| | | ||| | ||| ||| || Sbjct 3010708 TATGGATGTCAGCTTGCCATA-GTTGGGCTCAGCCACATGAATGTTGAACGATTGACTCT 3010650 Query 109517 GATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCC 109576 ||||||| || ||| ||||| || ||||| | ||| | | || || |||| Sbjct 3010649 GATCGATAAACGCACCGCGATCTGCGGCCATTTTAATGGTGGATTTCACAGAGATCTCCC 3010590 Query 109577 AGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGC 109636 | || |||||||||| || | || | ||||||| || |||| || || ||||||| Sbjct 3010589 AAACCGTCTTGTACAGATCGCGAACATTCTGGGGAATGGCCTCGATATTCTGGATAGAGC 3010530 Query 109637 CACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGA 109693 ||| | || | |||| | | |||||| || | ||| | | | || | | Sbjct 3010529 CAC--GGCTGGAA-ATGATCTGGTTCTTCATGTCATCATCCCACAAGTCCAGCTCAGTTA 3010473 Query 109694 GATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGT 109753 |||| | || || | ||||||||| ||||| || | || ||| || | Sbjct 3010472 GATCCCGCAATAGGTGATGGTTGACCACCTGGAATTCGCCGGAGAGAACGCGGCGTGTAT 3010413 Query 109754 AGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAG 109813 |||| || || ||||| || ||||| | || |||||||| | || || |||||||| | Sbjct 3010412 AGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGATG 3010353 Query 109814 CTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACC----CGC 109869 | ||||||||||| |||| ||| ||| ||||| | || | |||| | | | Sbjct 3010352 CCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTCCT 3010293 Query 109870 TCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTC-ACCAT--CCCACATA 109926 ||| || |||| ||| || ||| | || || ||| | ||||||| Sbjct 3010292 TCA-GCTTTGC---CCAGTC-------CCAG--AGGTTCGTGGGTACCTTGTCCCACATG 3010246 Query 109927 TCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCA 109986 || || || | |||| | || |||| | | | || |||| || || Sbjct 3010245 TCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATACGGGCCTTCG 3010186 Query 109987 ACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGA 110046 |||| ||||| || | || || || || ||| ||| || || ||||| || || Sbjct 3010185 ACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGATCTGT 3010126 Query 110047 GCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAA-AGAATAAACACATC 110105 ||||| ||| | | ||| || | ||| |||| | | | || ||||| || |||| Sbjct 3010125 TGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGGA-ATCTCATCAGAATCAAGGCATC 3010067 Query 110106 CGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA-------GCGTC 110158 || || |||||||| || | ||||||||||||||| |||| || || || || Sbjct 3010066 GGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTC 3010007 Query 110159 GAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218 |||| ||| ||| ||||| ||| || | | || |||||||| | ||||| Sbjct 3010006 CGGCAG-------GGGATAATAGTTGATGTCAATAATCTTGTTCAGATTCTTGGCCACAG 3009954 Query 110219 TCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACG--TTTTCGTCTCCTTATTGACATA 110276 |||| |||| || | || || | ||||| ||| |||||| | | | |||| Sbjct 3009953 TCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTACGTCTTTTCG-GGCGTCACAAACATG 3009895 Query 110277 TTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTC 110336 || |||||| || ||||| || ||||| || | ||||||| || ||| || Sbjct 3009894 TT----GAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGTACTC 3009839 Query 110337 CAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTT 110396 | ||||| || |||| ||| | ||| ||| |||| |||| |||||| || Sbjct 3009838 GACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTT 3009779 Query 110397 GGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAG 110456 |||||| |||||||| |||||||||| || | ||||| ||| ||| | || || Sbjct 3009778 CCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGAT 3009719 Query 110457 AATGGCCTTCCATACATCGGC--GGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCG 110514 ||||| || ||| | | || || || || || || || ||||| Sbjct 3009718 GATGGCGAACC--ACAGGGACTGAGCCTTAACTGTCCGATTGGCCTTTCCCTCGGCCTCG 3009661 Query 110515 TACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG 110574 || || ||||| | |||||| || | || ||||||| || || |||| Sbjct 3009660 TATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTG 3009601 Query 110575 TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGA 110634 | || || | |||||||| ||| || | |||| || | |||||| || || || || Sbjct 3009600 TGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGT 3009541 Query 110635 ATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGT 110694 ||||| | || |||| || || || |||| ||| || | || ||| Sbjct 3009540 ATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTC 3009481 Query 110695 AGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC- 110753 || ||||| || || | || |||||||||||| || || | ||||| || | || || Sbjct 3009480 AGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAGGCACCG 3009421 Query 110754 -----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGC 110808 ||| | || || |||||| || || || || |||||||| | ||| Sbjct 3009420 GGCCGCTT--GCCG-CCACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGCAGC 3009364 Query 110809 ATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTT---ATTGGCA 110865 || |||| | |||| ||| |||||||| || | | |||| | |||||| Sbjct 3009363 ATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCC---ACATATGGAAGTGCCCTTGGCA 3009307 Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTT 110906 || ||| |||| || || ||||| || |||||| |||| Sbjct 3009306 CGGATGCAATGGACATTCAGGCCAATGCCGCCCGCCGACTT 3009266 >seq4198 Length=487851 Score = 96.9 bits (106), Expect = 4e-15 Identities = 253/379 (67%), Gaps = 14/379 (4%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 || || ||| ||||||||||| || || || | || ||||| | ||| |||||| Sbjct 57776 AACCTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTT 57835 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAG 11612 || |||||||| | | | ||| |||||| || ||||| ||||| || || Sbjct 57836 GGTGGCGGCAATCAGGATCACGCCT---TCATTGCTTTCAAAACCATCCATCTCAACCAG 57892 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC-ACCTGCCGAACGCT 11671 | |||||| | ||||| || |||||||| ||| | || | |||||| ||| | Sbjct 57893 CATCTGGTTCAGTGTCTGCTCGCGCTCATCATTGCCGC-CACCCATACCTGCACCACGAT 57951 Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGT--TGGTTGGC-ACGTG 11728 ||| || || ||||| ||||| ||||| | || || || || || || Sbjct 57952 GGCGACCAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC--- 58008 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 |||||||||| | ||||| ||||| || ||||||||||||||||| || || |||| Sbjct 58009 CCTGTTCGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGT 58068 Query 11789 TTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 | |||| || ||| || ||||| | ||||| || ||||| || || | | Sbjct 58069 CGGAACCAGAGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACA 58128 Query 11849 GAGTCTTACCCGTACCAGG 11867 | || ||||| || || || Sbjct 58129 GGGTTTTACCAGTGCCCGG 58147 >seq4779 Length=3018021 Score = 84.2 bits (92), Expect = 3e-11 Identities = 197/291 (68%), Gaps = 10/291 (3%) Strand=Plus/Plus Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGT---TGGTTGGC 11723 ||| ||| | || || || || ||||| |||||||| | ||| || || || ||| Sbjct 1109342 ACGTTTCCTGCCCACGGCATCGATCTCGTCGATGAAGAGGATGCAGGGAGCGTGTTTG-- 1109399 Query 11724 ACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAAC 11783 || ||| |||| | || || ||||| | || || || |||||||| || | Sbjct 1109400 -CGGGCCATGGCGAACATGTCGCGCACACGAGAGGGACCCACGCCCACGAACATTTCCAG 1109458 Query 11784 GAAGTTTGCGGCAGAACACTG-AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAG 11842 ||| | | | || ||||| ||| ||||| ||||| | ||| || || |||| | Sbjct 1109459 GAACTCGGATCCCGA-CACTGTAATAAAGGGCACATTCGCCTCGCCGGCAGTGGCCTTGG 1109517 Query 11843 CGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGG 11902 | || || || || ||||| ||||||| ||| | || | ||| || ||| ||||||| Sbjct 1109518 CCAGCAGCGTTTTGCCCGTGCCAGGTGGACCCGTAAGCATGGCTCCCTTGGGTATCTTGG 1109577 Query 11903 CA-CCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 || ||| || | | || ||| ||| ||||| ||||||| |||| |||| Sbjct 1109578 CACCCAGATCGATA-TACTGCTGAGGGTTCTTCAGGAAGTTAACAAACTCC 1109627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588938150929800