Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 188 8e-43
seq4678 154 2e-32
seq16 125 8e-24
>seq4765
Length=3541379
Score = 188 bits (208), Expect = 8e-43
Identities = 645/993 (65%), Gaps = 23/993 (2%)
Strand=Plus/Minus
Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993
|||||| ||||| ||||| || || ||| |||| || || |||| || || || |||||
Sbjct 3010414 ATAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGA 3010355
Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053
|| || ||||| || |||| | ||| ||| | || || | || |||||| |||
Sbjct 3010354 TGCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTC 3010295
Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTT--CCCACATATCAAATTGA 106111
||| || ||||||| || | | ||| | ||||| ||||||| || | ||
Sbjct 3010294 CTTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGT--ACCTTGTCCCACATGTCGTACTGG 3010237
Query 106112 AGCAC-CCCTTGGG-ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169
|| | |||||| ||| || | ||||| | || ||||| | |||| | | | |
Sbjct 3010236 AGGATTCCCTTGCTCACGGGGCTG--CCCTCGTAGGTTTCATACGGGCCTTCGACCTGGG 3010179
Query 106170 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229
||| |||||| || || ||||||| | | | ||| || ||||||||||| | |||||
Sbjct 3010178 CCAGTTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGATCTGTTGATTCA 3010119
Query 106230 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 106289
|| || || || | | | | | || ||| || |||| ||||| |
Sbjct 3010118 GGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTCATCAGAATCAAGGCATCGGCGAGTC 3010059
Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGG 106349
| ||||| || | ||||| || | || | |||||| || || | || | | ||
Sbjct 3010058 CCTGAACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTCCGGCAGGG 3009999
Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 106409
||||| | || ||||||| | ||| ||||| |||| ||| |||| |||| || |
Sbjct 3009998 GATAATAGTTGATGTCAATAATCTTGTTCAGATTCTTGGCCACAGTCTTGGTGACCTCCT 3009939
Query 106410 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGA 106466
|| || | | |||| || || ||| ||| | ||| || | || ||||
Sbjct 3009938 TCAGCTTCTTAAAATC----GTACG--TCTTTTCGGGCGTCACAAACATGTTGAGAGCGA 3009885
Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526
| || |||| ||||| || || |||| || | |||||| | |||||||| |
Sbjct 3009884 TGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGTACTCGACGATTTCTGTGC 3009825
Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586
||| ||| | ||| || || |||| ||||| || || ||||| ||||||||||||
Sbjct 3009824 ACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGTTGCACGCAT 3009765
Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646
||||| |||||||||| || | || |||||| ||| | || || || || |||||
Sbjct 3009764 CCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGGCGAACCACA 3009705
Query 106647 -CATCGGCGGCTGGTACAATGGC--GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 106703
| | | || || | || | |||||| |||||| |||||||| || ||| |
Sbjct 3009704 GGGACTGAGCCT--TA-ACTGTCCGATTGGCCTTTCCCTCGGCCTCGTATTTAAGGTACA 3009648
Query 106704 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 106763
| |||||||| || ||| | | || || || || ||||| || || | |
Sbjct 3009647 GCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTGTGCGGGCACATTA 3009588
Query 106764 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 106823
| ||||| | || | |||| || |||||||| || || || || ||||| ||||
Sbjct 3009587 GGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCAGAGGGCAT 3009528
Query 106824 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 106883
| || ||||| | | ||| ||| || | || ||| | | || | |||||
Sbjct 3009527 AGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTCAGTTCCAAGAACT 3009468
Query 106884 CCATGATATCCGCGTGCCATGGCTCAAGATAGA 106916
| | || ||||| |||||| ||||| | |||||
Sbjct 3009467 CGAAGACATCCGAGTGCCAGGGCTCCAAATAGA 3009435
>seq4678
Length=1229792
Score = 154 bits (170), Expect = 2e-32
Identities = 292/427 (68%), Gaps = 2/427 (0%)
Strand=Plus/Plus
Query 117000 CTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATT 117059
||||||||||||||||||||| ||||| || || | ||||| |||| || |||||
Sbjct 1146137 CTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCATGAAGTTGAACGGATT 1146196
Query 117060 CTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACGATCCGACACATACT 117118
||| | ||| | || | ||| |||| || | || |||||||| | |||| |||
Sbjct 1146197 CTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACC-AGCAGACGATCGGCCACAAACT 1146255
Query 117119 CAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGCGTCCA 117178
||||||||| |||||| ||| ||||||| ||||| |||||| || || || ||
Sbjct 1146256 CAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAACCGGCAGGGCATCGG 1146315
Query 117179 AGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCGGTAG 117238
|| |||| | | |||||| || || || || | ||| || ||| |||
Sbjct 1146316 TGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGATGATGCGCTCGCGCC 1146375
Query 117239 TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCCTCAT 117298
| |||| | || | || ||| | | ||| ||||| || ||| ||||||||||
Sbjct 1146376 TCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCACAGTGCAGACCCTCAT 1146435
Query 117299 CTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACC 117358
| ||||| || || ||||| |||||| | || ||||| || || |||||||||| ||
Sbjct 1146436 CGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGCCGCGCTTCTTCAGCC 1146495
Query 117359 AATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAA 117418
| |||| | | || ||| |||||| || ||||| || |||||||||| |
Sbjct 1146496 AGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGGCGGCAAACGCAATGA 1146555
Query 117419 GGCGCTC 117425
||||||
Sbjct 1146556 TGCGCTC 1146562
>seq16
Length=193047
Score = 125 bits (138), Expect = 8e-24
Identities = 278/411 (68%), Gaps = 12/411 (3%)
Strand=Plus/Plus
Query 9152 CTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACG 9211
||| || || |||||| ||| || | ||| || ||||| ||||| |||||||||||
Sbjct 6862 CTCTCGACCACGAACATCTGGTTGACCAACTAAAATTTTACGGTCAAATCGACCTGGACG 6921
Query 9212 AAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT 9271
| | || |||||| | |||| || || || ||||| ||||||| | |||
Sbjct 6922 AGTCAAAGCTGGATCAAGAACATCAGAACGGTTAGTTGCGGCAATGACAATGACACC--- 6978
Query 9272 TTCATTATC---AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTC 9328
|||||| | |||||||||||| || || ||||| |||| |||||||| |||||
Sbjct 6979 TTCATTCCCTGTAAAACCATCCATTTCAACTAATAGTTGATTAAGGGTTTGTTCACGTTC 7038
Query 9329 ATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCA 9386
||| | | || ||| || | | |||| ||| ||||||||||| ||||||
Sbjct 7039 ATCGT--GACCGCCGCCCATTCCGGATCCACGTTTTCGTCCAACGGCATCAATTTCATCA 7096
Query 9387 ATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTG 9446
|| |||| || |||| ||||| ||| |||| | ||| | ||||| |
Sbjct 7097 ATAAAGATGATTGCTGGTGCATTTTTCTTGGCTTGGGCAAATAAATCTCTAACCCGGCTA 7156
Query 9447 GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGAC 9505
|| || ||||| |||||||| || || || | || | | | | || || ||| || ||
Sbjct 7157 GCACCAACACCCACAAACATTTCAACGAAATCTGATCCAG-ATAATGAATAGAATGGAAC 7215
Query 9506 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
||| | |||||| |||| ||| || || | |||||||| ||||| ||
Sbjct 7216 ATTTGCTTCACCAGCAACCGCTTTAGCTAGCAAGGTCTTACCGGTACCAGG 7266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589942886358840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |