Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4765 188 8e-43 seq4678 154 2e-32 seq16 125 8e-24 >seq4765 Length=3541379 Score = 188 bits (208), Expect = 8e-43 Identities = 645/993 (65%), Gaps = 23/993 (2%) Strand=Plus/Minus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 |||||| ||||| ||||| || || ||| |||| || || |||| || || || ||||| Sbjct 3010414 ATAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGA 3010355 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 || || ||||| || |||| | ||| ||| | || || | || |||||| ||| Sbjct 3010354 TGCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTC 3010295 Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTT--CCCACATATCAAATTGA 106111 ||| || ||||||| || | | ||| | ||||| ||||||| || | || Sbjct 3010294 CTTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGT--ACCTTGTCCCACATGTCGTACTGG 3010237 Query 106112 AGCAC-CCCTTGGG-ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169 || | |||||| ||| || | ||||| | || ||||| | |||| | | | | Sbjct 3010236 AGGATTCCCTTGCTCACGGGGCTG--CCCTCGTAGGTTTCATACGGGCCTTCGACCTGGG 3010179 Query 106170 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229 ||| |||||| || || ||||||| | | | ||| || ||||||||||| | ||||| Sbjct 3010178 CCAGTTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGATCTGTTGATTCA 3010119 Query 106230 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 106289 || || || || | | | | | || ||| || |||| ||||| | Sbjct 3010118 GGAGACCCGCCTCCTCGCTTTCGTAGGGGAATCTCATCAGAATCAAGGCATCGGCGAGTC 3010059 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGG 106349 | ||||| || | ||||| || | || | |||||| || || | || | | || Sbjct 3010058 CCTGAACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTCCGGCAGGG 3009999 Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 106409 ||||| | || ||||||| | ||| ||||| |||| ||| |||| |||| || | Sbjct 3009998 GATAATAGTTGATGTCAATAATCTTGTTCAGATTCTTGGCCACAGTCTTGGTGACCTCCT 3009939 Query 106410 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGA 106466 || || | | |||| || || ||| ||| | ||| || | || |||| Sbjct 3009938 TCAGCTTCTTAAAATC----GTACG--TCTTTTCGGGCGTCACAAACATGTTGAGAGCGA 3009885 Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526 | || |||| ||||| || || |||| || | |||||| | |||||||| | Sbjct 3009884 TGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGTACTCGACGATTTCTGTGC 3009825 Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586 ||| ||| | ||| || || |||| ||||| || || ||||| |||||||||||| Sbjct 3009824 ACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGTTGCACGCAT 3009765 Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 ||||| |||||||||| || | || |||||| ||| | || || || || ||||| Sbjct 3009764 CCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGGCGAACCACA 3009705 Query 106647 -CATCGGCGGCTGGTACAATGGC--GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 106703 | | | || || | || | |||||| |||||| |||||||| || ||| | Sbjct 3009704 GGGACTGAGCCT--TA-ACTGTCCGATTGGCCTTTCCCTCGGCCTCGTATTTAAGGTACA 3009648 Query 106704 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 106763 | |||||||| || ||| | | || || || || ||||| || || | | Sbjct 3009647 GCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTGTGCGGGCACATTA 3009588 Query 106764 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 106823 | ||||| | || | |||| || |||||||| || || || || ||||| |||| Sbjct 3009587 GGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCAGAGGGCAT 3009528 Query 106824 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 106883 | || ||||| | | ||| ||| || | || ||| | | || | ||||| Sbjct 3009527 AGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTCAGTTCCAAGAACT 3009468 Query 106884 CCATGATATCCGCGTGCCATGGCTCAAGATAGA 106916 | | || ||||| |||||| ||||| | ||||| Sbjct 3009467 CGAAGACATCCGAGTGCCAGGGCTCCAAATAGA 3009435 >seq4678 Length=1229792 Score = 154 bits (170), Expect = 2e-32 Identities = 292/427 (68%), Gaps = 2/427 (0%) Strand=Plus/Plus Query 117000 CTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATT 117059 ||||||||||||||||||||| ||||| || || | ||||| |||| || ||||| Sbjct 1146137 CTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTCCATGAAGTTGAACGGATT 1146196 Query 117060 CTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACGATCCGACACATACT 117118 ||| | ||| | || | ||| |||| || | || |||||||| | |||| ||| Sbjct 1146197 CTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACC-AGCAGACGATCGGCCACAAACT 1146255 Query 117119 CAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGCGTCCA 117178 ||||||||| |||||| ||| ||||||| ||||| |||||| || || || || Sbjct 1146256 CAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATTAACCGGCAGGGCATCGG 1146315 Query 117179 AGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCGGTAG 117238 || |||| | | |||||| || || || || | ||| || ||| ||| Sbjct 1146316 TGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTCGATGATGCGCTCGCGCC 1146375 Query 117239 TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCCTCAT 117298 | |||| | || | || ||| | | ||| ||||| || ||| |||||||||| Sbjct 1146376 TCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCACAGTGCAGACCCTCAT 1146435 Query 117299 CTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACC 117358 | ||||| || || ||||| |||||| | || ||||| || || |||||||||| || Sbjct 1146436 CGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAGGCATCAGGCCGCGCTTCTTCAGCC 1146495 Query 117359 AATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAA 117418 | |||| | | || ||| |||||| || ||||| || |||||||||| | Sbjct 1146496 AGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGCCCTCGACGGCGGCAAACGCAATGA 1146555 Query 117419 GGCGCTC 117425 |||||| Sbjct 1146556 TGCGCTC 1146562 >seq16 Length=193047 Score = 125 bits (138), Expect = 8e-24 Identities = 278/411 (68%), Gaps = 12/411 (3%) Strand=Plus/Plus Query 9152 CTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACG 9211 ||| || || |||||| ||| || | ||| || ||||| ||||| ||||||||||| Sbjct 6862 CTCTCGACCACGAACATCTGGTTGACCAACTAAAATTTTACGGTCAAATCGACCTGGACG 6921 Query 9212 AAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT 9271 | | || |||||| | |||| || || || ||||| ||||||| | ||| Sbjct 6922 AGTCAAAGCTGGATCAAGAACATCAGAACGGTTAGTTGCGGCAATGACAATGACACC--- 6978 Query 9272 TTCATTATC---AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTC 9328 |||||| | |||||||||||| || || ||||| |||| |||||||| ||||| Sbjct 6979 TTCATTCCCTGTAAAACCATCCATTTCAACTAATAGTTGATTAAGGGTTTGTTCACGTTC 7038 Query 9329 ATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCA 9386 ||| | | || ||| || | | |||| ||| ||||||||||| |||||| Sbjct 7039 ATCGT--GACCGCCGCCCATTCCGGATCCACGTTTTCGTCCAACGGCATCAATTTCATCA 7096 Query 9387 ATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTG 9446 || |||| || |||| ||||| ||| |||| | ||| | ||||| | Sbjct 7097 ATAAAGATGATTGCTGGTGCATTTTTCTTGGCTTGGGCAAATAAATCTCTAACCCGGCTA 7156 Query 9447 GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGAC 9505 || || ||||| |||||||| || || || | || | | | | || || ||| || || Sbjct 7157 GCACCAACACCCACAAACATTTCAACGAAATCTGATCCAG-ATAATGAATAGAATGGAAC 7215 Query 9506 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| | |||||| |||| ||| || || | |||||||| ||||| || Sbjct 7216 ATTTGCTTCACCAGCAACCGCTTTAGCTAGCAAGGTCTTACCGGTACCAGG 7266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589942886358840