Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_014969.1 Length=44055 Score E Sequences producing significant alignments: (Bits) Value seq4969 89.7 1e-13 >seq4969 Length=1161901 Score = 89.7 bits (98), Expect = 1e-13 Identities = 199/296 (67%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 937 CTGCCGGTTACGACCTGTTCAGCGCCGCTGATGTGGTGGTCCCGCCACGCAGCAGGGC-G 995 ||||||| |||||| ||||||| || | ||||| ||| |||| ||| ||| | Sbjct 225852 CTGCCGGCGTGGACCTGCGCAGCGCCTACGACATTGTGGTGCCGGCACGAGGCAAGGCCG 225911 Query 996 TTGATTCCCACGGATCTGTCTTTCCAGTTTCCCCGCGGTGTTTACGGCCGCATCGCCCCT 1055 ||| | || || ||| ||||| | ||| || ||||| ||| | ||||| Sbjct 225912 TTG-TGAAGACCGACCTGCAGGTCCAGGTGCCCGAGGGCTCCTACGGACGCGTGGCCCCA 225970 Query 1056 CGTTCGGGTCTGGCCGTCAAGTTTTTTATAGACGTGGGTGCCGGGGTGGTGGATAGCGAT 1115 || || ||||||||||| ||| || || |||||||| ||||| |||||||| || Sbjct 225971 CGCTCCGGTCTGGCCGTGAAGAACTTCATCGACGTGGGAGCCGGCGTGGTGGACGAGGAC 226030 Query 1116 TACCGCGGTATCGTGTCGGTGCTGCTGTTTAACTTTTCGGAGCACAATTTTAACGTGCGC 1175 ||||| || | | || || ||||||| ||| ||||| | || | ||| Sbjct 226031 TACCGTGGCAACCTGGGCGTCGTGCTGTTCAACCACTCGGACGTGGAGTTCGAGGTGAAG 226090 Query 1176 CGAGGTGACCGCATCGCCCAGATGATTTTGGAGCGTCACCTCACCCCGGATCTGGA 1231 || || ||||||||||||||| | || | ||||| | || ||||| ||||| Sbjct 226091 CGCGGCGACCGCATCGCCCAGTTCATCTGCGAGCGCATCTTCTATCCGGAGCTGGA 226146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140845800926914