Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_015274.1 Length=56506 Score E Sequences producing significant alignments: (Bits) Value seq4953 89.7 2e-13 >seq4953 Length=802672 Score = 89.7 bits (98), Expect = 2e-13 Identities = 182/268 (68%), Gaps = 8/268 (3%) Strand=Plus/Minus Query 10413 ATTGAAATTGATGCTGCTTCTAATAATGGGGTAGAAAATGTTCGAAACATTATTGAAGAT 10472 |||||||||||||| || || ||||| || || ||| | || |||| ||| ||| | Sbjct 182745 ATTGAAATTGATGCCGCCTCCAATAACGGAGTTGAAGAGATTAGAAATATTCGTGATAAG 182686 Query 10473 TCTAGATACAAGTCTATGGACAGCGAGTTCAAAGTTTACATCATTGACGAGGTTCATATG 10532 | | || | | || | ||| || || || |||||||| || ||||||||| Sbjct 182685 GCCAAGTATGCTCCCACCGAAGGGAAGTATAAGGTCTATATCATTGATGAAGTTCATATG 182626 Query 10533 CTTTCAACCGGAGCATTTAATGCGCTGTTGAAAACATTAGAAGAGCCCTCATCGGGAAC- 10591 | ||||| || || ||||| || || | |||||||||||||| || || |||| Sbjct 182625 TTATCAACGGGGGCTTTTAACGCCCTTCTTAAAACATTAGAAGAACCACCA----GAACA 182570 Query 10592 CGTG---TTCATTCTATGTACTACTGACCCTCAAAAGATTCCTGACACTATTCTCAGTCG 10648 |||| || ||| || || ||||| || ||||||||||| | || ||| | || Sbjct 182569 CGTGATTTTTATTTTAGCGACCACTGAACCACAAAAGATTCCGGCTACCATTATTTCACG 182510 Query 10649 AGTTCAACGGTTTGACTTTACTCGAATT 10676 || |||||||| |||| || ||| Sbjct 182509 GACACAGCGGTTTGATTTTAAGCGGATT 182482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180686568524456