Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2670 145 9e-30 >seq2670 Length=149592 Score = 145 bits (160), Expect = 9e-30 Identities = 345/519 (66%), Gaps = 2/519 (0%) Strand=Plus/Plus Query 159262 AAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCA 159321 || ||| | |||| ||| | || | |||| || | || || |||||||| | || | Sbjct 142020 AAGTGGCTGTGTGCTATTAGCGGTTATGATGCTGTTTCCTTCCAACCTAATTCTGGCGCG 142079 Query 159322 CAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGAT 159381 ||||| || |||||||| || | | || | || || ||||| || || || | Sbjct 142080 CAGGGGGAATATGCAGGTTTGCTTGTTATTCGTGCGTATCATCAGGGGCGTGGGGAAGGG 142139 Query 159382 AAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTG 159441 | | | || ||||| || || | || || ||||| || || || || || || Sbjct 142140 CATCGGACAGTTTGTTTAATTCCGGCTTCTGCGCATGGTACCAACCCAGCTTCTGCCCAA 142199 Query 159442 ATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAA 159501 ||||| || ||||| ||||| | || |||||||||| | |||||||| || | || Sbjct 142200 ATGGCGGGCATGAAGGTTGTGGTGGTAAAGTGTGATGCAGGCGGCAACATTGATCTGGAA 142259 Query 159502 GATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATAT 159561 || | ||||| || | || | ||| ||| | | |||||||| ||| Sbjct 142260 GACATGCGTGAGAAAATAAAGGCGCATGCGAATGATCTGGCCGCAGTGATGATTACTTAT 142319 Query 159562 CCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCA-TGA 159620 || || || ||||| || |||||| |||||| | | || ||| | | || || | | Sbjct 142320 CCTTCCACTCATGGCGTGTTTGAAGAAAACATGCGTGAAATCTGTGATCTGGTGCACTCA 142379 Query 159621 GAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAA 159680 | ||||| ||||||||| | ||||| || || | ||||| ||||| || || ||| Sbjct 142380 GCC-GGTGGGCAGGTATATGTGGATGGCGCCAACATGAATGCTCAGGTTGGGCTTGCACG 142438 Query 159681 ACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCC 159740 || ||||| |||| ||||| |||| | ||| | ||||| || ||||| ||||| Sbjct 142439 CCCGGCAGACTACGGTGGGGATGTTAGTCACTTTAACCTGCATAAAACTTTCTGCATTCC 142498 Query 159741 ACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||| || || || || || | || || |||||||| Sbjct 142499 ACATGGTGGCGGTGGCCCGGGTATGGGGCCAATTGGTGT 142537 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 157879 CTTATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTT 157938 || || || ||||| || || || || | ||| | || || ||||| || |||| Sbjct 140616 CTGATCGGGCAAGGGTATTACGGTACGGTGCTGCCCGCTGTTATCCAGCGGAATATTCTG 140675 Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 || ||||| |||||||||| ||||||| || ||||| | || || || || | Sbjct 140676 GAAAATCCGGCTTGGTACACAGCTTACACGCCGTATCAGCCAGAAATCAGCCAAGGGCGT 140735 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 ||||||| | || || | |||||| | || ||||| || ||||| | || || Sbjct 140736 CTGGAAGCCCTGTTGAACTTCCAAACCATGATTACAGAGCTGACAGGGTTGGATATCGCC 140795 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGC 158111 ||| | ||||| ||||||||||||| ||||| |||||||| ||| ||| || Sbjct 140796 AACTCTTCTCTGCTAGATGAAGCAACAGCAGCGGCAGAAGCCATGGCGTTGGC 140848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588013410359760