Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq4198 89.7 6e-13 seq4968 87.8 2e-12 seq4953 84.2 2e-11 >seq4198 Length=487851 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 22401 TGCCCTTATAGCTCAGTGGTAGAGCAACGCTTTTGTAAAGCGTAGGTCGTTGGTTCAAAT 22460 |||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| Sbjct 42731 TGCCCTTATAGCTCAGTGGTAGAGCAACCGCCTTGTAAGCGGTAGGTCGTGGGTTCAAAT 42790 Query 22461 CCGACTGGGGGC 22472 || ||||||||| Sbjct 42791 CCTACTGGGGGC 42802 >seq4968 Length=441983 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 17789 GGGCGAATAGCTCAGCGGTAGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCGATCC 17848 |||| | ||||||||||||||||| ||||||||||||||| |||||| |||||||||| Sbjct 397420 GGGCAATTAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGATGGTCGGCGGTTCGATCC 397479 Query 17849 CCTCTTCGCCCAC 17861 | || | |||||| Sbjct 397480 CGTCATTGCCCAC 397492 >seq4953 Length=802672 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 22473 TTTGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCG 22532 |||||||||||||||||| ||| ||||| |||||||||||||||||| |||| ||||| Sbjct 221909 TTTGGGGAATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGAGGTCAACGGTTCG 221850 Query 22533 AGTCTCCTATTCTCCA 22548 | | ||||||||| Sbjct 221849 ATCCCGTTATTCTCCA 221834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560571973928400