Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4810 154 3e-32 seq4863 138 3e-27 seq4644 138 3e-27 seq4765 122 2e-22 >seq4810 Length=1195048 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| | |||||| |||||||| || || || |||||||||| || || | || || Sbjct 316516 CAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTC 316457 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || || ||||| || || || |||||||| |||||||| || ||||| Sbjct 316456 CTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 316397 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || |||||||||||| || ||||| || || || |||||||| | || Sbjct 316396 CTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGACCTCAAGGGTGATAGT 316337 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||||||| || ||||| | |||||| Sbjct 316336 CTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 316304 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| | |||||| || ||||| || || || ||||| || | ||||| | ||||| Sbjct 316744 CAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATC 316685 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || || ||||| || || || |||||||| |||||||| || ||||| Sbjct 316684 CTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 316625 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || |||||||||||||||||| || || || || |||||||| | || Sbjct 316624 CTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGT 316565 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||||||| || ||||| | ||||| Sbjct 316564 CTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 Score = 145 bits (160), Expect = 2e-29 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTAC 195001 ||||||||| || || || |||||||||| |||| || | || || || |||||||| | Sbjct 316957 AGTGGACTCCTTCTGGATGTTGTAATCGGACAAG-GTGCGTCCGTCCTCCAGCTGCTTTC 316899 Query 195002 CTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCT 195061 | || ||||| || || || |||||||| |||||||| || ||||| || || || || Sbjct 316898 CGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCT 316839 Query 195062 TGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAG 195121 |||||||||| |||||||| || || || |||||||| | ||||| || ||||||| Sbjct 316838 TGACGTTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAAAG 316779 Query 195122 TTTTTACGAACACTTGCAT 195140 | || ||||| | ||||| Sbjct 316778 TCTTGACGAAGATCTGCAT 316760 >seq4863 Length=1240122 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| ||||| | ||||| || ||||| Sbjct 1064082 GTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTG 1064023 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || || ||||| |||||||| || ||||| || || || Sbjct 1064022 CTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 1063963 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| ||||| |||||||||||| ||||| || ||||| | ||||| || || Sbjct 1063962 GGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGT 1063903 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| Sbjct 1063902 GAGGGTTTTCACGAAGATCTGCAT 1063879 >seq4644 Length=1132839 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| |||| || || | || || || ||||| Sbjct 751826 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTG 751767 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || |||||||| || || || ||||| || || || Sbjct 751766 CTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTT 751707 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||||||||||||| ||| || || | ||| | |||||||| || Sbjct 751706 GGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACCTCCAAGGTGATGGTCTTTCCAGT 751647 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 ||| ||||| || || | ||||||| Sbjct 751646 CAAGGTTTTCACAAAGATCTGCATTT 751621 Score = 127 bits (140), Expect = 5e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| |||| || || | || ||||| ||||| Sbjct 752283 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCCAGCTG 752224 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || |||||||| || || || ||||| || || || Sbjct 752223 CTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTT 752164 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||||||||| || ||||| || | ||| | |||||||| || Sbjct 752163 GGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTTCCGGT 752104 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | |||||| Sbjct 752103 AAGAGTCTTCACGAAGATCTGCATT 752079 Score = 127 bits (140), Expect = 5e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| || || || ||||| |||| || || | || || || ||||| Sbjct 752739 GTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTG 752680 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| || || || || |||||||| ||||| Sbjct 752679 CTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCTTGGATTTT 752620 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||||||||| || |||||||| || || | |||||||| || Sbjct 752619 GGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTTCCAGT 752560 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || || || || || | |||||| Sbjct 752559 CAGGGTCTTCACAAAGATCTGCATT 752535 Score = 116 bits (128), Expect = 8e-21 Identities = 150/206 (73%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| || || || ||||| || | || || | ||||| || ||||| Sbjct 752055 GTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCCAGCTG 751996 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || || || || |||||||| || || || ||||| || || || Sbjct 751995 CTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTT 751936 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC-TG 195115 ||| || |||||||||||||| || |||||||| || || | |||||||| | Sbjct 751935 GGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTTCCGAG 751876 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 | | ||| || || || | |||||| Sbjct 751875 TAAGAGTCTTCACAAAGATCTGCATT 751850 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||| || || || ||||| |||| || || | || || || |||||| Sbjct 752510 TGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGC 752451 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | || || || |||||||| || || || ||||| || || || Sbjct 752450 TTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTTG 752391 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || |||||||||||||| || ||||| || | ||| | |||||||| ||| Sbjct 752390 GCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTTCCGGTC 752331 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | || || || || | |||||| Sbjct 752330 AGGGTCTTCACAAAGATCTGCATT 752307 >seq4765 Length=3541379 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || ||||| || || || | || || | |||||||| |||||||| || Sbjct 2921430 GTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2921489 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || || || || ||||||||||| ||||||||||| ||||| || ||| Sbjct 2921490 GCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 2921549 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || || |||||||| ||| || ||||| || | ||||| || || | || Sbjct 2921550 ACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 2921609 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 2921610 TTCACGAAGATCTGCAT 2921626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109408519487147