Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5094 123 2e-22 seq4768 87.8 1e-11 >seq5094 Length=366253 Score = 123 bits (136), Expect = 2e-22 Identities = 155/210 (74%), Gaps = 12/210 (6%) Strand=Plus/Minus Query 361626 AAACATCGAGTGTTCCTGCACCTAAATCATATATGATAATATTCCCCCCGTTTTTATTTT 361685 ||||||| | || ||| ||||||||||||| | ||| ||| |||| || || Sbjct 124483 AAACATCAAAAGTACCTCCACCTAAATCATAAAC--TAAGATT-------TTTTCATCTT 124433 Query 361686 TCCAAGTTTTACTTCCAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTT 361745 | ||||| || || |||||| || | |||||| || || ||||| ||||| ||| Sbjct 124432 TGTCTTTTTTA--TCTAA-ACCATATGCAAGTGAAGCTGCAGTAGGTTCATTAATAATTC 124376 Query 361746 TAATAACATTGAGTCCCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCAT 361805 | |||||| ||||| || ||||| |||||| || ||||||||||| ||||||| Sbjct 124375 TTTTAACATCAAGTCCGGCAATTTTACCGGCATCTTTGGTAGCTTGACGTTGAGCATCAT 124316 Query 361806 TAAAATATGCAGGAACAGTAATCACTGCTT 361835 |||| || |||||||||||||| ||||||| Sbjct 124315 TAAAGTAAGCAGGAACAGTAATAACTGCTT 124286 Score = 123 bits (136), Expect = 2e-22 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| || || || |||||||| | |||||||||||||| |||||||| Sbjct 124288 GCAGTTATTACTGTTCCTGCTTACTTTAATGATGCTCAACGTCAAGCTACCAAAGATGCC 124347 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||| |||||| ||||| | ||||| |||||||||||||| ||| ||||| Sbjct 124348 GGTAAAATTGCCGGACTTGATGTTAAAAGAATTATTAATGAACCTACTGCAGCTTCACTT 124407 Query 550520 GCATATGGACTTGATAAA 550537 |||||||| | |||||| Sbjct 124408 GCATATGGTTTAGATAAA 124425 Score = 98.7 bits (108), Expect = 8e-15 Identities = 247/376 (66%), Gaps = 12/376 (3%) Strand=Plus/Plus Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 |||| || ||||| ||||||||| ||||| || ||||||| | || || |||| Sbjct 124958 TTAACCCTGATGAAGCTGTTGCCCTAGGTGCAGCTATTCAAGGTGGAGTTATTACTGG-- 125015 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 ||||| || || | || | | ||||||||||| | || | || Sbjct 125016 ----TGATGTTAAGG------ATGTCGTTTTGCTTGATGTTACTCCATTGTCATTAGGCA 125065 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | ||||| | || ||| | | ||||| | ||||||||||| ||||| || || | Sbjct 125066 TTGAAACCATGGGTGGTGTATTTACTAAGTTAATCGATAGAAACACTACAATCCCAACTT 125125 Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 ||| || | ||| || || | |||||||||||||||||| ||||| ||| Sbjct 125126 CAAAGTCACAAACATTCTCAACTGCCGCTGATAATCAAACTGCTGTTGACATTCATGTTT 125185 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 | |||| ||| | | | || ||| |||| ||| ||| ||| | ||| | Sbjct 125186 TACAAGGTGAACGTCCAATGGCTGCTGATGATAAGTCACTAGGTCGTTTCCAATTAACTG 125245 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 ||||||| |||| || | || || || |||||||||||||| || ||||| ||| | Sbjct 125246 ATATTCCTGCTGCACCAAGAGGTGTTCCACAAATTGAAGTTACCTTTGATATTGATAAAA 125305 Query 552568 ATGGAATTTTGAATGT 552583 | |||||| | ||||| Sbjct 125306 ACGGAATTGTTAATGT 125321 >seq4768 Length=2945258 Score = 87.8 bits (96), Expect = 1e-11 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || ||||| || || || ||||| || || || || || ||||| || || ||||| || Sbjct 358215 GTCACGGACGCGGTCATCACTGTGCCGGCCTACTTCAACGACTCTCAGCGCCAAGCCACC 358156 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || || ||||| || || ||||| || || || || || || ||||| || || || || Sbjct 358155 AAGGACGCTGGCCGCATCGCTGGGCTGAACGTGCTCCGGATCATCAACGAGCCCACGGCG 358096 Query 550511 GCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTT 550570 || ||||| || || || || || || || | | || | || || ||||||||| Sbjct 358095 GCAGCACTGGCCTACGGCCTGGACAAGAATCTTCAGGGGGAGCGCAACGTGCTCATCTTT 358036 Query 550571 GATTGTGGAGG 550581 || | ||||| Sbjct 358035 GACTTGGGAGG 358025 Score = 87.8 bits (96), Expect = 1e-11 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || ||||| || || || ||||| || || || || || ||||| || || ||||| || Sbjct 362271 GTCACGGACGCGGTCATCACTGTGCCGGCCTACTTCAACGACTCTCAGCGCCAAGCCACC 362330 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || || ||||| || || ||||| || || || || || || ||||| || || || || Sbjct 362331 AAGGACGCTGGCCGCATCGCTGGGCTGAACGTGCTCCGGATCATCAACGAGCCCACGGCG 362390 Query 550511 GCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTT 550570 || ||||| || || || || || || || | | || | || || ||||||||| Sbjct 362391 GCAGCACTGGCCTACGGCCTGGACAAGAATCTTCAGGGGGAGCGCAACGTGCTCATCTTT 362450 Query 550571 GATTGTGGAGG 550581 || | ||||| Sbjct 362451 GACTTGGGAGG 362461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029024120734090