Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4761 185 7e-42 seq5094 84.2 2e-11 >seq4761 Length=1439414 Score = 185 bits (204), Expect = 7e-42 Identities = 449/673 (67%), Gaps = 14/673 (2%) Strand=Plus/Plus Query 29724 AAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 29783 |||||| || | || || |||| | | || ||| ||| ||||||| || | || Sbjct 1350148 AAAGTCCTCAATGTCCTGCACCTTGCGCTTGATCACCAGCTTGGGAAACGGACGCGGAGT 1350207 Query 29784 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 29843 | || ||||| ||||||||| ||||| |||| |||||||| |||||||| |||| Sbjct 1350208 GCGCTGCAGCTGCTCCTTCAGCGGATCCACATGATTTAGGTAGACATGAGCGTCGCCCAT 1350267 Query 29844 GGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAG 29903 ||| || ||||| || || || | || || || || || || ||||||| || || || Sbjct 1350268 GGTATGAACAAAGTCACCAGGCTTCAGACCTGTCACATGGGCTATCATGTGGGTAAGCAG 1350327 Query 29904 AGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG 29963 | ||| ||||||||| || || || || || |||||||| | ||||||||| || Sbjct 1350328 GGCGTAAGAGGCGATGTTGAATGGCACGCCCAGACCCATGTCAGCGCTCCTCTGGTACAG 1350387 Query 29964 CTGACACGAGAGCTCTCC---GTC---GCTCACGTAAAACTGACACATGGTGTGGCACGG 30017 |||||| || | ||| || ||| | ||| | ||||| || | ||| || || Sbjct 1350388 CTGACAGGACAACTCGCCACGGTCCTGGGATACGAAGAACTGCGCCAGGCAGTGACATGG 1350447 Query 30018 AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 30077 || || ||||| | || ||| ||||| ||| ||| ||||||||||||||| Sbjct 1350448 CGGCAGCGCCATCTTTGGTATATCCAGGGGATTCCATGCGGACATGATGATGCGCCTGTC 1350507 Query 30078 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30137 || |||||| | || || | | | ||||||| || | ||| || Sbjct 1350508 CGACGGATTGTTCTTTATCGTCTCGATCACCTGACGCAGCTGGTCGATGCCCTGGCCGCT 1350567 Query 30138 GTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACA 30196 |||||| | | || || || |||||||| || || |||| ||||||||| ||||| | Sbjct 1350568 GTAGTCGTCGTCGCAGGTGCG-ATACTCTGCCCCAAAGTGCCGCCACTGGAAGCCGTATA 1350626 Query 30197 CCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 30256 |||| |||| ||||| || ||| | | | |||| |||||||| | || |||| Sbjct 1350627 CCGGGCCCAAATCTCCGACTGCCCGCTCCGTGTGGCCCAGCTTGTCCAGGTACTCCCTGG 1350686 Query 30257 AACCGTTGGCGTCCCAGATCTTTACCCCCTT--CTCGGAG-AGCTCTTTGGAGTTTGTGG 30313 | ||| | ||||| || | || || || |||| ||| |||| || || Sbjct 1350687 TGCTGTTCCCATCCCATATGTGCACGTTTTTGGCTTGGAGAAGC---TTGGCGTCCGTCT 1350743 Query 30314 ACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCG 30373 || ||| ||||| || |||||||| | ||||| | ||||| | |||||| | Sbjct 1350744 TACCAGCGACAAACCAAAGTAGCTCCTCGGCCACGGCGCGGAAGAAGACACGCTTGGTGG 1350803 Query 30374 TGAGGAGGGGAAA 30386 | || |||||||| Sbjct 1350804 TCAGCAGGGGAAA 1350816 >seq5094 Length=366253 Score = 84.2 bits (92), Expect = 2e-11 Identities = 183/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 29823 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29882 ||| | |||||| ||||| || || || ||||| || || || || || || | | Sbjct 188651 GTAAATGTGAGCATCTCCTAGAGTATGAACAAAATCACCGGGCTCAAGACCTACCTCTTT 188592 Query 29883 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 29942 || || | || || | |||| || || ||||||||||| || || || || || Sbjct 188591 TGCAATTAAGTTAGTCAAAAGAGCATAACTAGCGATGTTAAACGGAACTCCAAGGAAAAT 188532 Query 29943 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30002 ||| || || ||| || | ||| || || | ||||||| | |||||||| ||| | Sbjct 188531 GTCGCCACTCCGCTGATACAACTGGCAACTCAGTTTTCCGTCGTTAACGTAAAATTGAAA 188472 Query 30003 CATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACAC 30062 ||| || |||||||| || ||||| || | ||||| || |||||||| | || Sbjct 188471 CATTACATGACACGGAGGGAGTGCCATACTTCCAATGTCTTCTGGATTCCAGGCACTTAC 188412 Query 30063 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 30096 || || || || ||||| || ||| | ||| Sbjct 188411 AATCATTCGTCTTGAATCTGGATTATTCTTAATG 188378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408591997681193