Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq4761 185 7e-42
seq5094 84.2 2e-11
>seq4761
Length=1439414
Score = 185 bits (204), Expect = 7e-42
Identities = 449/673 (67%), Gaps = 14/673 (2%)
Strand=Plus/Plus
Query 29724 AAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 29783
|||||| || | || || |||| | | || ||| ||| ||||||| || | ||
Sbjct 1350148 AAAGTCCTCAATGTCCTGCACCTTGCGCTTGATCACCAGCTTGGGAAACGGACGCGGAGT 1350207
Query 29784 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 29843
| || ||||| ||||||||| ||||| |||| |||||||| |||||||| ||||
Sbjct 1350208 GCGCTGCAGCTGCTCCTTCAGCGGATCCACATGATTTAGGTAGACATGAGCGTCGCCCAT 1350267
Query 29844 GGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAG 29903
||| || ||||| || || || | || || || || || || ||||||| || || ||
Sbjct 1350268 GGTATGAACAAAGTCACCAGGCTTCAGACCTGTCACATGGGCTATCATGTGGGTAAGCAG 1350327
Query 29904 AGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG 29963
| ||| ||||||||| || || || || || |||||||| | ||||||||| ||
Sbjct 1350328 GGCGTAAGAGGCGATGTTGAATGGCACGCCCAGACCCATGTCAGCGCTCCTCTGGTACAG 1350387
Query 29964 CTGACACGAGAGCTCTCC---GTC---GCTCACGTAAAACTGACACATGGTGTGGCACGG 30017
|||||| || | ||| || ||| | ||| | ||||| || | ||| || ||
Sbjct 1350388 CTGACAGGACAACTCGCCACGGTCCTGGGATACGAAGAACTGCGCCAGGCAGTGACATGG 1350447
Query 30018 AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 30077
|| || ||||| | || ||| ||||| ||| ||| |||||||||||||||
Sbjct 1350448 CGGCAGCGCCATCTTTGGTATATCCAGGGGATTCCATGCGGACATGATGATGCGCCTGTC 1350507
Query 30078 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30137
|| |||||| | || || | | | ||||||| || | ||| ||
Sbjct 1350508 CGACGGATTGTTCTTTATCGTCTCGATCACCTGACGCAGCTGGTCGATGCCCTGGCCGCT 1350567
Query 30138 GTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACA 30196
|||||| | | || || || |||||||| || || |||| ||||||||| ||||| |
Sbjct 1350568 GTAGTCGTCGTCGCAGGTGCG-ATACTCTGCCCCAAAGTGCCGCCACTGGAAGCCGTATA 1350626
Query 30197 CCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 30256
|||| |||| ||||| || ||| | | | |||| |||||||| | || ||||
Sbjct 1350627 CCGGGCCCAAATCTCCGACTGCCCGCTCCGTGTGGCCCAGCTTGTCCAGGTACTCCCTGG 1350686
Query 30257 AACCGTTGGCGTCCCAGATCTTTACCCCCTT--CTCGGAG-AGCTCTTTGGAGTTTGTGG 30313
| ||| | ||||| || | || || || |||| ||| |||| || ||
Sbjct 1350687 TGCTGTTCCCATCCCATATGTGCACGTTTTTGGCTTGGAGAAGC---TTGGCGTCCGTCT 1350743
Query 30314 ACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCG 30373
|| ||| ||||| || |||||||| | ||||| | ||||| | |||||| |
Sbjct 1350744 TACCAGCGACAAACCAAAGTAGCTCCTCGGCCACGGCGCGGAAGAAGACACGCTTGGTGG 1350803
Query 30374 TGAGGAGGGGAAA 30386
| || ||||||||
Sbjct 1350804 TCAGCAGGGGAAA 1350816
>seq5094
Length=366253
Score = 84.2 bits (92), Expect = 2e-11
Identities = 183/274 (67%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 29823 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29882
||| | |||||| ||||| || || || ||||| || || || || || || | |
Sbjct 188651 GTAAATGTGAGCATCTCCTAGAGTATGAACAAAATCACCGGGCTCAAGACCTACCTCTTT 188592
Query 29883 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 29942
|| || | || || | |||| || || ||||||||||| || || || || ||
Sbjct 188591 TGCAATTAAGTTAGTCAAAAGAGCATAACTAGCGATGTTAAACGGAACTCCAAGGAAAAT 188532
Query 29943 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30002
||| || || ||| || | ||| || || | ||||||| | |||||||| ||| |
Sbjct 188531 GTCGCCACTCCGCTGATACAACTGGCAACTCAGTTTTCCGTCGTTAACGTAAAATTGAAA 188472
Query 30003 CATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACAC 30062
||| || |||||||| || ||||| || | ||||| || |||||||| | ||
Sbjct 188471 CATTACATGACACGGAGGGAGTGCCATACTTCCAATGTCTTCTGGATTCCAGGCACTTAC 188412
Query 30063 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 30096
|| || || || ||||| || ||| | |||
Sbjct 188411 AATCATTCGTCTTGAATCTGGATTATTCTTAATG 188378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408591997681193
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |