Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq261 107 3e-18 >seq261 Length=229512 Score = 107 bits (118), Expect = 3e-18 Identities = 192/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 22951 CGGTCGGCGTAGGAAACTTCGCACT--CTTCATCAGATTCAAAGAACAGAATTTGTGCGC 23008 || || |||||| ||||||||| ||| ||| | ||||||||||| || || Sbjct 73799 CGATCTGCGTAGCTTACTTCGCACGGGCTT--TCACCCTTAAAGAACAGAAACTG---GC 73853 Query 23009 AA---CCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAG 23065 || ||||| || || || |||| || || ||||| ||| | ||| | | Sbjct 73854 AAATGCCTTCATTGGCATAAATGCGTGCAGGCAACGGCGTGGTGTTGCTGATCTCGATCG 73913 Query 23066 TAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCG 23125 | | | |||| |||||||||||| | || |||||||| ||||| |||||||| |||| Sbjct 73914 TTACCTGTCCTTCCCATTCTGGTTCTAAAGGGGTGACGTTGACGATAATGCCGCAGCGCG 73973 Query 23126 CATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCG 23185 |||| || ||||| || | ||| | || | ||| |||||||| || ||||| ||| Sbjct 73974 CATAGGTGGATTTACCCAAGCATACTACCAGTACATCACGCGGGATACGGAAGTATTCAA 74033 Query 23186 GCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT 23222 ||| | ||||| | || ||||| |||||||| || Sbjct 74034 TCGTATGGGCCAGCACAAAGCTGTTGGGCGGAATAAT 74070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897535918391280