Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_018283.1
Length=58065
Score E
Sequences producing significant alignments: (Bits) Value
seq1660 242 1e-59
>seq1660
Length=13821
Score = 242 bits (268), Expect = 1e-59
Identities = 617/925 (67%), Gaps = 23/925 (2%)
Strand=Plus/Minus
Query 15339 TTTGGGCAAGGCCGTCCAATGGTGGCGCAAACCATGTCCCAAATAATGCAGCCG-TCCAC 15397
||||||||||| | ||||| || ||||||||||| ||||| | | ||| || |||||
Sbjct 3670 TTTGGGCAAGGTCTACCAATTGTCGCGCAAACCATATCCCACAACA-GCACCCCATCCAC 3612
Query 15398 CAGTTCTTGCCGTGTAATGATCTCGGTGGAAAGGCGCGTGTGGATACCCGACCATGCGTT 15457
| | | ||| | ||| || || | | ||| || ||||| || |||||||| |||||
Sbjct 3611 TCGCTGGTTCCGCGCAATCATTTCAGCGCTAAGACGTGTGTGAATGCCCGACCAAGCGTT 3552
Query 15458 ATGCCTCGGGTCTGCGCCGGGATTCGTGCAGACGCTCCAAACGATGAATTCATTTGCATT 15517
| || ||||| || ||||| | |||| ||||| | | || |||| ||
Sbjct 3551 TCGTTGAGGATCTGCACCAGGATTGGAACAGATACTCCAGATCACAAACTCATCAGCGAG 3492
Query 15518 CGCCGGACGCTGAAAGATGTTCGTGTTGTTGCCATCCAAGCAACCCTTTAGCTCGATGAC 15577
| ||| || | ||| || |||||||| || ||||| | || ||||| || || || ||
Sbjct 3491 TGGCGGTCGTTCAAAAATATTCGTGTTATTCCCATCAAGACAGCCCTTAAGGTCAATAAC 3432
Query 15578 AGCGACACGATCTG-ATGGAAGCGTCACGGAATAATCGTGCCGGTTGGC-TTCGCCGGAT 15635
||| ||||| | || | || || |||||| | ||||| || || | |
Sbjct 3431 AGCAACACGTCCACTATTTAGACGA-ACAATATAATCATTACGGTTTGCATTATCTGTCA 3373
Query 15636 GACTCCCACTCTTTGATGAAGTGGTTATCCTGCATATAGTTTAGGACGCGCTGAACAAAC 15695
|| ||||| | || || | || | ||||| || || | |||||||||||
Sbjct 3372 GA-TCCCATCCAGCAATAAAACCGCCGTCTTCCATATGATTCAGCGCATGCTGAACAAAC 3314
Query 15696 TCCCGCTTCTCACGCATGGTAGCTGAGAACTGGCCGCGAATGCGTTCGATAGCGCCCCGA 15755
|| || || ||||||| || || || |||||||| || | || || || ||||| |||
Sbjct 3313 TCTCGTTTGCCACGCATAGTGGCCGAAAACTGGCCACGGACACGCTCTATCGCGCCACGA 3254
Query 15756 AACACGCCACTATTATAGAATTC-CGCTTCGCCTAAGCCGTGAAGGCCGAGCTTATGGCC 15814
|||| ||| | |||||| || ||| || | || || || ||| || ||||| |
Sbjct 3253 AACAAACCAGACTGATAGAACTCTCGC-TCATCCAAACCATGGTCGCCAAGTTTATGCGC 3195
Query 15815 TTCAGCCTTCAGCACATCTGAATACTCTTCGATCTTTTTCCGCAATTCAGCGTTCTGCTC 15874
||| | || || | || | | || ||||| | | |||||| | |||||| |
Sbjct 3194 TTCTGTTTTAAGTATTTCAGCAAACCTCTCGATTTGATCGCGCAATCCCTTGTTCTGTTT 3135
Query 15875 GCACGGAATGATATTCATGCGGCGACCT-TTGCCGACGTTGGA----CTTCCAAGAATTC 15929
|| ||||| || |||||| || ||| || || | | ||| | ||||| |
Sbjct 3134 ACAGGGAATAATGGTCATGCCGCTTCCTGTTTCC--CTTCGGAAACCATGCCAAGTAACG 3077
Query 15930 GCTCAAAAAGATGATGAGCCAAATGGCGGACTACGGGAACGACCACACCATCGCCGGTCA 15989
| || | | ||| || |||| ||| || || || || || | || ||||| || ||||
Sbjct 3076 GTTCCAGGATATGCTGCGCCAGATGACGAACGACAGGCACAGCTACGCCATCCCCTGTCA 3017
Query 15990 GGTGGTACGCCTCGTTGTAGTTCTCAGGGAGCTTGTAATCGTCAGGCAAGCCCATGAGGC 16049
|||| || || || || || |||| ||| |||||||||| || | ||||| || |
Sbjct 3016 GGTGATAAGCTTCATTATAATTCTTAGGCAGCTTGTAATGATCTCCGAGCCCCATCAGCC 2957
Query 16050 GCGCCGTTTCGCGACTAGATATCAGGCGAGAGCGAACCTTGTCACGTTGCACAACTAAGA 16109
|| ||||| ||| | || || || || || |||||||| | | ||||| | |
Sbjct 2956 TTGCTGTTTCACGAGTGGAGATTAGCCGCGACCGAACCTTCCGGCCGTCAACAACAATAA 2897
Query 16110 TTGACTGCCGACTTGAACCGCCAGCCGGAGTGCGGAGACAACCCGAGATATCATCAAATC 16169
||| ||| || |||||||| || ||||| || || |||||||| | |||||| ||||| |
Sbjct 2896 TTGTCTGACGGCTTGAACCCCCTGCCGGCGTCCGAAGACAACCTGCGATATCGTCAAACC 2837
Query 16170 GAATTTCCGCGCGCTGCACCTT----GCGTTTGAATTCGTCGAGACGTGTGCGCTTGTAA 16225
| | ||| || ||||| || || |||| ||| || |||||||| || | ||
Sbjct 2836 GCACTTCAGCACGCTGAACTTTCGCCCCGTT----TTCATCAAGACGTGTTCGTCTATAG 2781
Query 16226 ATTCCGCCAACCATGCGCTTGGCCG 16250
|| | || ||||| ||| || |||
Sbjct 2780 ATGGCTCCCACCATACGCCTGCCCG 2756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 185675063961334
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |