Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq1660 242 1e-59 >seq1660 Length=13821 Score = 242 bits (268), Expect = 1e-59 Identities = 617/925 (67%), Gaps = 23/925 (2%) Strand=Plus/Minus Query 15339 TTTGGGCAAGGCCGTCCAATGGTGGCGCAAACCATGTCCCAAATAATGCAGCCG-TCCAC 15397 ||||||||||| | ||||| || ||||||||||| ||||| | | ||| || ||||| Sbjct 3670 TTTGGGCAAGGTCTACCAATTGTCGCGCAAACCATATCCCACAACA-GCACCCCATCCAC 3612 Query 15398 CAGTTCTTGCCGTGTAATGATCTCGGTGGAAAGGCGCGTGTGGATACCCGACCATGCGTT 15457 | | | ||| | ||| || || | | ||| || ||||| || |||||||| ||||| Sbjct 3611 TCGCTGGTTCCGCGCAATCATTTCAGCGCTAAGACGTGTGTGAATGCCCGACCAAGCGTT 3552 Query 15458 ATGCCTCGGGTCTGCGCCGGGATTCGTGCAGACGCTCCAAACGATGAATTCATTTGCATT 15517 | || ||||| || ||||| | |||| ||||| | | || |||| || Sbjct 3551 TCGTTGAGGATCTGCACCAGGATTGGAACAGATACTCCAGATCACAAACTCATCAGCGAG 3492 Query 15518 CGCCGGACGCTGAAAGATGTTCGTGTTGTTGCCATCCAAGCAACCCTTTAGCTCGATGAC 15577 | ||| || | ||| || |||||||| || ||||| | || ||||| || || || || Sbjct 3491 TGGCGGTCGTTCAAAAATATTCGTGTTATTCCCATCAAGACAGCCCTTAAGGTCAATAAC 3432 Query 15578 AGCGACACGATCTG-ATGGAAGCGTCACGGAATAATCGTGCCGGTTGGC-TTCGCCGGAT 15635 ||| ||||| | || | || || |||||| | ||||| || || | | Sbjct 3431 AGCAACACGTCCACTATTTAGACGA-ACAATATAATCATTACGGTTTGCATTATCTGTCA 3373 Query 15636 GACTCCCACTCTTTGATGAAGTGGTTATCCTGCATATAGTTTAGGACGCGCTGAACAAAC 15695 || ||||| | || || | || | ||||| || || | ||||||||||| Sbjct 3372 GA-TCCCATCCAGCAATAAAACCGCCGTCTTCCATATGATTCAGCGCATGCTGAACAAAC 3314 Query 15696 TCCCGCTTCTCACGCATGGTAGCTGAGAACTGGCCGCGAATGCGTTCGATAGCGCCCCGA 15755 || || || ||||||| || || || |||||||| || | || || || ||||| ||| Sbjct 3313 TCTCGTTTGCCACGCATAGTGGCCGAAAACTGGCCACGGACACGCTCTATCGCGCCACGA 3254 Query 15756 AACACGCCACTATTATAGAATTC-CGCTTCGCCTAAGCCGTGAAGGCCGAGCTTATGGCC 15814 |||| ||| | |||||| || ||| || | || || || ||| || ||||| | Sbjct 3253 AACAAACCAGACTGATAGAACTCTCGC-TCATCCAAACCATGGTCGCCAAGTTTATGCGC 3195 Query 15815 TTCAGCCTTCAGCACATCTGAATACTCTTCGATCTTTTTCCGCAATTCAGCGTTCTGCTC 15874 ||| | || || | || | | || ||||| | | |||||| | |||||| | Sbjct 3194 TTCTGTTTTAAGTATTTCAGCAAACCTCTCGATTTGATCGCGCAATCCCTTGTTCTGTTT 3135 Query 15875 GCACGGAATGATATTCATGCGGCGACCT-TTGCCGACGTTGGA----CTTCCAAGAATTC 15929 || ||||| || |||||| || ||| || || | | ||| | ||||| | Sbjct 3134 ACAGGGAATAATGGTCATGCCGCTTCCTGTTTCC--CTTCGGAAACCATGCCAAGTAACG 3077 Query 15930 GCTCAAAAAGATGATGAGCCAAATGGCGGACTACGGGAACGACCACACCATCGCCGGTCA 15989 | || | | ||| || |||| ||| || || || || || | || ||||| || |||| Sbjct 3076 GTTCCAGGATATGCTGCGCCAGATGACGAACGACAGGCACAGCTACGCCATCCCCTGTCA 3017 Query 15990 GGTGGTACGCCTCGTTGTAGTTCTCAGGGAGCTTGTAATCGTCAGGCAAGCCCATGAGGC 16049 |||| || || || || || |||| ||| |||||||||| || | ||||| || | Sbjct 3016 GGTGATAAGCTTCATTATAATTCTTAGGCAGCTTGTAATGATCTCCGAGCCCCATCAGCC 2957 Query 16050 GCGCCGTTTCGCGACTAGATATCAGGCGAGAGCGAACCTTGTCACGTTGCACAACTAAGA 16109 || ||||| ||| | || || || || || |||||||| | | ||||| | | Sbjct 2956 TTGCTGTTTCACGAGTGGAGATTAGCCGCGACCGAACCTTCCGGCCGTCAACAACAATAA 2897 Query 16110 TTGACTGCCGACTTGAACCGCCAGCCGGAGTGCGGAGACAACCCGAGATATCATCAAATC 16169 ||| ||| || |||||||| || ||||| || || |||||||| | |||||| ||||| | Sbjct 2896 TTGTCTGACGGCTTGAACCCCCTGCCGGCGTCCGAAGACAACCTGCGATATCGTCAAACC 2837 Query 16170 GAATTTCCGCGCGCTGCACCTT----GCGTTTGAATTCGTCGAGACGTGTGCGCTTGTAA 16225 | | ||| || ||||| || || |||| ||| || |||||||| || | || Sbjct 2836 GCACTTCAGCACGCTGAACTTTCGCCCCGTT----TTCATCAAGACGTGTTCGTCTATAG 2781 Query 16226 ATTCCGCCAACCATGCGCTTGGCCG 16250 || | || ||||| ||| || ||| Sbjct 2780 ATGGCTCCCACCATACGCCTGCCCG 2756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185675063961334