Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq4863 122 7e-23
seq4644 107 2e-18
seq4764 100 2e-16
>seq4863
Length=1240122
Score = 122 bits (134), Expect = 7e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || ||||| || || || || || ||||| |||| | ||| | | |||| |||
Sbjct 1064087 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 1064028
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || ||||| |||| |||||| ||||| || |||||||| || || || ||
Sbjct 1064027 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 1063968
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | ||||| || | ||||| || || |||| || |||
Sbjct 1063967 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTGATGGTCTTG 1063908
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472
||||| | ||||| || || |||||||||||
Sbjct 1063907 CCGGTGAGGGTTTTCACGAAGATCTGCATGGT 1063876
>seq4644
Length=1132839
Score = 107 bits (118), Expect = 2e-18
Identities = 169/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
||||||| | | ||| | || || || || || || || || || || ||||| ||||
Sbjct 752764 TTCCTCCGCGGAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGG 752705
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
|| || | | || |||| ||||| || || || ||||||||||| ||||| || |
Sbjct 752704 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 752645
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
| || || || || ||||| ||||| || ||| | || | ||||| || | ||||
Sbjct 752644 GTATTCCCTCCTTGTCTTGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752585
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480
|||| ||||||| || || || || | || || ||||| |||||||| | |||| |
Sbjct 752584 CTTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCATTCCTCCGCGCA 752525
Query 101481 GA 101482
||
Sbjct 752524 GA 752523
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
||||||| | | ||| | || || || ||||| || || || || || ||||| ||||
Sbjct 751851 TTCCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 751792
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
|| || | | || |||| ||||| || || || ||||||||||| ||||| || |
Sbjct 751791 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 751732
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
| || || || || || || || || || ||| | || | ||||| || | ||| |
Sbjct 751731 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAA 751672
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
| || | |||| || || || || || ||||| ||||| ||||||||
Sbjct 751671 CCTCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 751623
Score = 98.7 bits (108), Expect = 8e-16
Identities = 167/242 (69%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
||||||| | | ||| | || ||||| ||||| || || || || || ||||| ||||
Sbjct 752536 TTCCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGG 752477
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
|| || | | || |||| ||||| || || || ||||||||||| ||||| || |
Sbjct 752476 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 752417
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
| || || || || || || || || || ||| | || | ||||| || | ||||
Sbjct 752416 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752357
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480
| || | |||| || || ||||| | || || ||||| |||||||| | |||| |
Sbjct 752356 CCTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATTCCTCCGCGCA 752297
Query 101481 GA 101482
||
Sbjct 752296 GA 752295
Score = 95.1 bits (104), Expect = 1e-14
Identities = 166/242 (69%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300
||||||| | | ||| | || || || ||||| || || || || || ||||| ||||
Sbjct 752308 TTCCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 752249
Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360
|| || | | || |||| ||||| || || || ||||||||||| ||||| || |
Sbjct 752248 AGAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAG 752189
Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420
| || || || || || || || || || ||| | || | ||||| || | ||||
Sbjct 752188 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752129
Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480
| || | |||| || || ||||| | ||| || || || |||||||| | |||| |
Sbjct 752128 CCTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCATTCCTCCGCGCA 752069
Query 101481 GA 101482
||
Sbjct 752068 GA 752067
>seq4764
Length=1750656
Score = 100 bits (110), Expect = 2e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 13666 ACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCCATCCAGGCACG 13725
||| |||| ||||||||| || || ||||| |||| | |||||| ||||| |
Sbjct 341850 ACAGCCTTGGTAATTCATGTACCGAATCTTACCGAAGATGGCCCGCTCCTTCCAGCCCAT 341791
Query 13726 ATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGATCGCGTCCATC 13785
|||||| |||| || |||||||||||||| |||| |||||||||||||| || ||
Sbjct 341790 ATCGTGGACGCCGCCGATGGACCACATGCAACCCACATAGCCGTTGGGATCGCGCCCGTC 341731
Query 13786 CAAACTGTATTTGTCGTT 13803
|| ||||| ||||||||
Sbjct 341730 CAGGCTGTACTTGTCGTT 341713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396253570805337
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |