Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4765 280 3e-70 seq4678 259 9e-64 seq4679 96.9 6e-15 >seq4765 Length=3541379 Score = 280 bits (310), Expect = 3e-70 Identities = 1002/1537 (65%), Gaps = 82/1537 (5%) Strand=Plus/Minus Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 |||||| ||||||| | |||||| || || ||||| || | | || | || | Sbjct 3010461 AGGTGATGGTTGACCACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTG 3010402 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||||| | |||||||| |||| ||||| |||||| || ||||||||| Sbjct 3010401 GTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATG 3010342 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGAT-GAGGCGCCGAAGCTCTGC 213079 || ||||| || ||| ||| || || ||||| | ||| || | | |||| ||| Sbjct 3010341 GGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTC-CTTCAGCTTTGC 3010283 Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGT-----CCTTCACGTTCCACATGTCAAACTGC 213134 ||||||||| |||| |||| |||| || ||||||||| |||| Sbjct 3010282 CCAGTCCCAG---------AGGT--TCGTGGGTACCTT---GTCCCACATGTCGTACTGG 3010237 Query 213135 AAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCC 213194 | ||| || ||||||||||||||||||| ||| | || ||||| | ||| |||| Sbjct 3010236 AGGATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATACGGGCCTTCGACCTGGGCC 3010177 Query 213195 AGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGC 213254 || || || || | |||||| | || || || |||||||| |||| ||||| Sbjct 3010176 AGTTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGATCT----GTTGA-- 3010123 Query 213255 TTCTTG------GCCTCTGGGGA--CGTGAAGGGCATCATCATGCGTTGGAACACATCAG 213306 ||| | ||||| | ||| | ||| ||| |||| | || |||| | Sbjct 3010122 TTCAGGAGACCCGCCTCCTCGCTTTCGT-AGGGGAATC-TCATCAGAATCAAGGCATCGG 3010065 Query 213307 CCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCT 213366 | || ||||| || || ||||| ||||| | || |||| || || || | |||| Sbjct 3010064 CGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTCCG 3010005 Query 213367 CCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACT---TTGG 213423 || ||| ||| ||||| ||| || |||||||| || || ||||||| |||| Sbjct 3010004 GCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGATTCT---TGGCCACAGTCTTGG 3009948 Query 213424 TGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCA 213483 |||| | ||| | || || | || || | | | | ||||||| | Sbjct 3009947 TGACCTCCTTCAGCTTCTTAAAATCGTAC--GTCTTTTCGGGCGT-CACAAACATGTTGA 3009891 Query 213484 GGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GAGAGTCTGTGTACTCCATGA 213540 | |||||| ||||||||||| ||||| | ||| | | ||| | |||||| | || Sbjct 3009890 GAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAG---GAGTACTCGACGA 3009834 Query 213541 TCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGT 213600 | || |||||||| |||||||| ||||||||||| ||||| || || ||| || Sbjct 3009833 TTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGT 3009774 Query 213601 TGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCT 213660 || | ||||||| |||||||||| || || ||||| | ||| | | | | || Sbjct 3009773 TGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGG 3009714 Query 213661 GGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACT 213720 | ||| ||| || ||||| || ||| || | ||| || |||||||| | Sbjct 3009713 CGAACCACAGGGACTGAGCCTTAACTGTCCGATTGGCCTTTCCCT-CG--GCCTCGTATT 3009657 Query 213721 GTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGAC--CCTGTCCAGTCCCGGACAGGA-TG 213777 ||| |||| | || |||| |||||| || |||| ||| || ||||| || Sbjct 3009656 TAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCCTG--CAGGCCGGGACACTTGTG 3009599 Query 213778 CGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGG 213836 |||| ||||| ||| ||||| | | | ||| ||| | || ||| || || || || Sbjct 3009598 CGGG-CACATTAGGGACCAGTTTTCATTCGCCTC-GACGCGCTTCATAAAGAGATCGGGT 3009541 Query 213837 ACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGC 213896 | ||| || || ||| || || | | | |||| ||| || | ||| || | Sbjct 3009540 ATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTC 3009481 Query 213897 AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC 213956 || || | || || |||| |||| |||||| ||||||| |||||||||||||| || Sbjct 3009480 AGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAGGCACCG 3009421 Query 213957 GGCCTCTTGCCG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACG 214013 |||| ||||||| ||||||||||| || ||||| ||||||||| ||||| | | Sbjct 3009420 GGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGCAGCATG 3009361 Query 214014 GGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGG 214073 || || || || ||||| || || || || ||| | | ||| ||| | || Sbjct 3009360 GGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCAC---GG 3009304 Query 214074 TTGCTCATGGA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCT 214129 ||| ||||| || || ||||| || || |||||||||||||||| ||| | Sbjct 3009303 ATGC-AATGGACATTCAGGCCAATGCCGCCCGCCGACTTGGAGATCATGGCACAGTGTTC 3009245 Query 214130 CACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGA 214189 ||| | || | ||||| | || || ||| | | |||| | ||||||| ||| Sbjct 3009244 CACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGGACGA 3009185 Query 214190 GAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTT 214249 |||||| |||| | || | ||| | ||| || ||||| ||| || | | || Sbjct 3009184 GAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTGTGTGAAGAAGCG 3009125 Query 214250 GTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAG 214309 | || | | |||| ||||||| | | |||||| | ||||| | Sbjct 3009124 CTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTTCACCATGGATTCCAAT 3009065 Query 214310 AGCGCAC-CTCATCAGCATGTGCTGGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGA 214365 || ||| | ||||||||||||||| |||| || | || || || | ||| | Sbjct 3009064 CGC-CACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTACCGTT---TCTCTTCA 3009009 Query 214366 GCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 ||| || || |||||||| |||||||| |||||||| Sbjct 3009008 GCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTA 3008972 >seq4678 Length=1229792 Score = 259 bits (286), Expect = 9e-64 Identities = 556/823 (68%), Gaps = 11/823 (1%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || ||||| | |||||||||||||| ||||| || |||| |||||| |||| Sbjct 1146119 CTGATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTC 1146178 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||| || || ||||| || | | | || ||||| || ||||||| Sbjct 1146179 CATGAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAG 1146238 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||| || || |||| ||||| | ||||| ||| ||||||||| || || Sbjct 1146239 ACGATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATT 1146298 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || |||| || | ||||| ||||||| ||| || | ||| || || | | |||| Sbjct 1146299 AACCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTC 1146358 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGC-GCAGGTGCTTGGCATAGAGCAT--GCAG-G 48134 | | ||| ||| | | | || || ||| | | || | || ||| ||| | Sbjct 1146359 GATGATGCG---CTC-GCGCCTCGGTCGCTGCACCAGAT--GC-TGGAACATCAGCACCG 1146411 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | ||||| || || || ||| ||| ||| | ||||||||| | ||||| Sbjct 1146412 CAAAGTCACAGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAG 1146471 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || || ||||||||||| | || || ||| |||||| |||| Sbjct 1146472 GCATCAGGCCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGC 1146531 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || || ||||| ||| | ||| || || || |||| ||||||| Sbjct 1146532 CCTCGACGGCGGCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCC 1146591 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 |||| || |||||||| ||||| ||| | ||||| ||||| ||||| ||| | Sbjct 1146592 AGGACAGGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACA 1146651 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 | | | | || || |||| || || || || |||| ||||||||| | Sbjct 1146652 GATATTCCCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCG 1146711 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 | ||||| ||||| || ||||||||||| || || ||| | |||||| | ||| | Sbjct 1146712 AATGCACGTTCTCCATGGCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTA 1146771 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || | || | ||||| ||||||||| ||||| || ||||| || || ||||||| Sbjct 1146772 CCTCCTGGCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGA 1146831 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 |||| || ||||| | ||| ||||| |||| | | || || |||| | | Sbjct 1146832 AGGCCAGCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCGGTGA 1146891 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 || ||| || |||||| |||||||| ||||||||||| || Sbjct 1146892 GATCCTTGGACAAGTCCACCTCTTCCACGGTCCAGAAGGAGGC 1146934 >seq4679 Length=685389 Score = 96.9 bits (106), Expect = 6e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 |||||| | ||| ||| || |||||| || |||||| ||||| |||||| |||||| Sbjct 32486 CTTGAGGATCTTGACTCGATCTTCCAGCTTCGAGATGCGCTCCAGCTTGCGCTTGCGGCA 32545 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 || | |||||||| |||||||| | ||||| |||||| ||| || |||||| Sbjct 32546 CTTTGAGGCTGCCACACGGTTCCGCTGCCTCTTCCGTTCCAGCTTAATCTTCTCCTGGGT 32605 Query 241609 CTCCATGTCGATCGGA 241624 |||||||||||| ||| Sbjct 32606 CTCCATGTCGATGGGA 32621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931472937373440