Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 280 3e-70
seq4678 259 9e-64
seq4679 96.9 6e-15
>seq4765
Length=3541379
Score = 280 bits (310), Expect = 3e-70
Identities = 1002/1537 (65%), Gaps = 82/1537 (5%)
Strand=Plus/Minus
Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960
|||||| ||||||| | |||||| || || ||||| || | | || | || |
Sbjct 3010461 AGGTGATGGTTGACCACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTG 3010402
Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020
||||| ||||||| | |||||||| |||| ||||| |||||| || |||||||||
Sbjct 3010401 GTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATG 3010342
Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGAT-GAGGCGCCGAAGCTCTGC 213079
|| ||||| || ||| ||| || || ||||| | ||| || | | |||| |||
Sbjct 3010341 GGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTC-CTTCAGCTTTGC 3010283
Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGT-----CCTTCACGTTCCACATGTCAAACTGC 213134
||||||||| |||| |||| |||| || ||||||||| ||||
Sbjct 3010282 CCAGTCCCAG---------AGGT--TCGTGGGTACCTT---GTCCCACATGTCGTACTGG 3010237
Query 213135 AAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCC 213194
| ||| || ||||||||||||||||||| ||| | || ||||| | ||| ||||
Sbjct 3010236 AGGATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATACGGGCCTTCGACCTGGGCC 3010177
Query 213195 AGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGC 213254
|| || || || | |||||| | || || || |||||||| |||| |||||
Sbjct 3010176 AGTTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGATCT----GTTGA-- 3010123
Query 213255 TTCTTG------GCCTCTGGGGA--CGTGAAGGGCATCATCATGCGTTGGAACACATCAG 213306
||| | ||||| | ||| | ||| ||| |||| | || |||| |
Sbjct 3010122 TTCAGGAGACCCGCCTCCTCGCTTTCGT-AGGGGAATC-TCATCAGAATCAAGGCATCGG 3010065
Query 213307 CCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCT 213366
| || ||||| || || ||||| ||||| | || |||| || || || | ||||
Sbjct 3010064 CGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTCCG 3010005
Query 213367 CCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACT---TTGG 213423
|| ||| ||| ||||| ||| || |||||||| || || ||||||| ||||
Sbjct 3010004 GCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGATTCT---TGGCCACAGTCTTGG 3009948
Query 213424 TGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCA 213483
|||| | ||| | || || | || || | | | | ||||||| |
Sbjct 3009947 TGACCTCCTTCAGCTTCTTAAAATCGTAC--GTCTTTTCGGGCGT-CACAAACATGTTGA 3009891
Query 213484 GGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GAGAGTCTGTGTACTCCATGA 213540
| |||||| ||||||||||| ||||| | ||| | | ||| | |||||| | ||
Sbjct 3009890 GAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAG---GAGTACTCGACGA 3009834
Query 213541 TCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGT 213600
| || |||||||| |||||||| ||||||||||| ||||| || || ||| ||
Sbjct 3009833 TTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGT 3009774
Query 213601 TGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCT 213660
|| | ||||||| |||||||||| || || ||||| | ||| | | | | ||
Sbjct 3009773 TGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGG 3009714
Query 213661 GGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACT 213720
| ||| ||| || ||||| || ||| || | ||| || |||||||| |
Sbjct 3009713 CGAACCACAGGGACTGAGCCTTAACTGTCCGATTGGCCTTTCCCT-CG--GCCTCGTATT 3009657
Query 213721 GTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGAC--CCTGTCCAGTCCCGGACAGGA-TG 213777
||| |||| | || |||| |||||| || |||| ||| || ||||| ||
Sbjct 3009656 TAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCCTG--CAGGCCGGGACACTTGTG 3009599
Query 213778 CGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGG 213836
|||| ||||| ||| ||||| | | | ||| ||| | || ||| || || || ||
Sbjct 3009598 CGGG-CACATTAGGGACCAGTTTTCATTCGCCTC-GACGCGCTTCATAAAGAGATCGGGT 3009541
Query 213837 ACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGC 213896
| ||| || || ||| || || | | | |||| ||| || | ||| || |
Sbjct 3009540 ATCCAGAGGGCATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTC 3009481
Query 213897 AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC 213956
|| || | || || |||| |||| |||||| ||||||| |||||||||||||| ||
Sbjct 3009480 AGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAGGCACCG 3009421
Query 213957 GGCCTCTTGCCG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACG 214013
|||| ||||||| ||||||||||| || ||||| ||||||||| ||||| | |
Sbjct 3009420 GGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGCAGCATG 3009361
Query 214014 GGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGG 214073
|| || || || ||||| || || || || ||| | | ||| ||| | ||
Sbjct 3009360 GGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCAC---GG 3009304
Query 214074 TTGCTCATGGA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCT 214129
||| ||||| || || ||||| || || |||||||||||||||| ||| |
Sbjct 3009303 ATGC-AATGGACATTCAGGCCAATGCCGCCCGCCGACTTGGAGATCATGGCACAGTGTTC 3009245
Query 214130 CACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGA 214189
||| | || | ||||| | || || ||| | | |||| | ||||||| |||
Sbjct 3009244 CACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGGACGA 3009185
Query 214190 GAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTT 214249
|||||| |||| | || | ||| | ||| || ||||| ||| || | | ||
Sbjct 3009184 GAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTGTGTGAAGAAGCG 3009125
Query 214250 GTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAG 214309
| || | | |||| ||||||| | | |||||| | ||||| |
Sbjct 3009124 CTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTTCACCATGGATTCCAAT 3009065
Query 214310 AGCGCAC-CTCATCAGCATGTGCTGGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGA 214365
|| ||| | ||||||||||||||| |||| || | || || || | ||| |
Sbjct 3009064 CGC-CACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTACCGTT---TCTCTTCA 3009009
Query 214366 GCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402
||| || || |||||||| |||||||| ||||||||
Sbjct 3009008 GCAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTA 3008972
>seq4678
Length=1229792
Score = 259 bits (286), Expect = 9e-64
Identities = 556/823 (68%), Gaps = 11/823 (1%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || || ||||| | |||||||||||||| ||||| || |||| |||||| ||||
Sbjct 1146119 CTGATACTCGCCCACCTTCTTCTCAAAGAAGTTGGTCTTGCCATCCAGCGAGATCATCTC 1146178
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958
||||||| ||| || || ||||| || | | | || ||||| || |||||||
Sbjct 1146179 CATGAAGTTGAACGGATTCTTGGTGTTGTAGATCTTTCCCACGCCCAGCTCGACCAGCAG 1146238
Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018
|||| || || |||| ||||| | ||||| ||| ||||||||| || ||
Sbjct 1146239 ACGATCGGCCACAAACTCAATGTACTGCGACATCAGGTCACAGTTCATGCCGATCAGATT 1146298
Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078
|| |||| || | ||||| ||||||| ||| || | ||| || || | | ||||
Sbjct 1146299 AACCGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGTCCACAGCGTCGCGGATGATCTC 1146358
Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGC-GCAGGTGCTTGGCATAGAGCAT--GCAG-G 48134
| | ||| ||| | | | || || ||| | | || | || ||| ||| |
Sbjct 1146359 GATGATGCG---CTC-GCGCCTCGGTCGCTGCACCAGAT--GC-TGGAACATCAGCACCG 1146411
Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194
||||||| | ||||| || || || ||| ||| ||| | ||||||||| | |||||
Sbjct 1146412 CAAAGTCACAGTGCAGACCCTCATCGCGGGAGATCAGCTCATTGGAGAAGGTCAAACCAG 1146471
Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254
|||| | || | || || ||||||||||| | || || ||| |||||| ||||
Sbjct 1146472 GCATCAGGCCGCGCTTCTTCAGCCAGAAAATGGAGGCAAAGCTGCCGCTGAAGAAAATGC 1146531
Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314
|||| || || || ||||| ||| | ||| || || || |||| |||||||
Sbjct 1146532 CCTCGACGGCGGCAAACGCAATGATGCGCTCCCCAAAGTTGGCCGACTTGGAAGAGATCC 1146591
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374
|||| || |||||||| ||||| ||| | ||||| ||||| ||||| ||| |
Sbjct 1146592 AGGACAGGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATGGTCTCAATGGCATTGAACA 1146651
Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434
| | | | || || |||| || || || || |||| ||||||||| |
Sbjct 1146652 GATATTCCCGCTGGTGTGGGTCCCGAATGTAAGTGTCGATCAGCACACTGTACATCTCCG 1146711
Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494
| ||||| ||||| || ||||||||||| || || ||| | |||||| | ||| |
Sbjct 1146712 AATGCACGTTCTCCATGGCGATCTGGAAGCCATAAAAGCAGCGGGCCTCGGTGATCTGTA 1146771
Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554
| || | || | ||||| ||||||||| ||||| || ||||| || || |||||||
Sbjct 1146772 CCTCCTGGCTAAAGCGCTCCACCAGATTCTCGTTGACAATACCATCGGAGGCGGCAAAGA 1146831
Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614
|||| || ||||| | ||| ||||| |||| | | || || |||| | |
Sbjct 1146832 AGGCCAGCACATGGGAGATGAAGTGGCGTTCGTCATCCTTAAGGCGATGCCAGTCGGTGA 1146891
Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
|| ||| || |||||| |||||||| ||||||||||| ||
Sbjct 1146892 GATCCTTGGACAAGTCCACCTCTTCCACGGTCCAGAAGGAGGC 1146934
>seq4679
Length=685389
Score = 96.9 bits (106), Expect = 6e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548
|||||| | ||| ||| || |||||| || |||||| ||||| |||||| ||||||
Sbjct 32486 CTTGAGGATCTTGACTCGATCTTCCAGCTTCGAGATGCGCTCCAGCTTGCGCTTGCGGCA 32545
Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608
|| | |||||||| |||||||| | ||||| |||||| ||| || ||||||
Sbjct 32546 CTTTGAGGCTGCCACACGGTTCCGCTGCCTCTTCCGTTCCAGCTTAATCTTCTCCTGGGT 32605
Query 241609 CTCCATGTCGATCGGA 241624
|||||||||||| |||
Sbjct 32606 CTCCATGTCGATGGGA 32621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931472937373440
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