Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4765 188 1e-42 seq4678 174 3e-38 >seq4765 Length=3541379 Score = 188 bits (208), Expect = 1e-42 Identities = 521/790 (66%), Gaps = 13/790 (2%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| || ||||| | |||||| || |||| | ||| ||||| || || Sbjct 3009879 GCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGTACTCGACGATTTCTGTGCACAGA 3009820 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||||||||||||||| |||| | | ||||| ||| | ||| || |||||| Sbjct 3009819 TTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGTTGCACGCATCCTTG 3009760 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 ||||||| | ||| ||||||||||| ||| ||| | | || | ||| || Sbjct 3009759 AAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGGCGAACCACAG-GGA 3009701 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 ||| || | || |||| ||| | ||||||| || | || || || ||| | Sbjct 3009700 CTGAGCCTTAACTGTCCGATTGGCCTTTCCCTCGGCCTCGT-ATTTAAGG--TACAGCTT 3009644 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGAC 222011 ||||||| || || || | || | |||||| |||||| || ||||| ||||| || Sbjct 3009643 CTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTGTGCGGG-CACATTAGGG 3009585 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 ||||| | || | | ||| | || ||| ||||| || || ||||| || || | | Sbjct 3009584 ACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCAGAGGGCATAGA 3009525 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 | ||||| | | || | ||||||| |||| |||| || |||| ||||| ||||| | Sbjct 3009524 ATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGA 3009465 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | || | |||||| ||||||| ||||| ||| | || ||||| |||||| ||||| Sbjct 3009464 AGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAGGCACCGGGCCGCTTGCCGCCAC 3009405 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||| ||||| || ||| | |||||||| || || | || || || || |||| Sbjct 3009404 CCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGCAGCATGGGAACGAGGCCATTGG 3009345 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGC 222311 | || || ||||| ||| | | || ||| | | | | | || || || Sbjct 3009344 AGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCACGGATGCAATGGACATTCAGGC 3009285 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 | || || || || || ||||||||||| ||| | | | | | ||||| | Sbjct 3009284 CAATGCCGCCCGCCGACTTGGAGATCATGGCACAGTGTTCCACCGACTTAAAAATGCCTT 3009225 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG---ATTTGGTGG 222428 | || || ||| | | | |||| || || || ||||| | ||| | || |||| Sbjct 3009224 CGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTGG 3009165 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488 | |||| ||||| ||||| ||||||||| ||| ||| | |||| || || || Sbjct 3009164 CAGCGGCG---AACAGGGTGGGCGAGGCGTGTGTGAAGAAGCGCTCTGACAACAAATTGT 3009108 Query 222489 ACGTCTCTAC 222498 | ||||| || Sbjct 3009107 ATGTCTCCAC 3009098 >seq4678 Length=1229792 Score = 174 bits (192), Expect = 3e-38 Identities = 471/728 (65%), Gaps = 9/728 (1%) Strand=Plus/Minus Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 ||| |||| |||||||| ||||| |||||||| || |||||||||||| ||| | || Sbjct 1146841 GTGCTGGCCTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTT 1146782 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | ||| || ||| | |||||| || || || || |||||||| ||||| || Sbjct 1146781 AGCCAGGAGGTACAGATCACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAG 1146722 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCC 25773 || ||||| || ||| |||| || | ||||| || |||||| ||| | Sbjct 1146721 AACGTGCATTCGGAGATGTA---CAGTGTGCTGATCGACACTTACATTCGGGACCCACAC 1146665 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 || | || ||||| |||||| ||| ||| || | ||| | ||||| Sbjct 1146664 CAGCGGGAATATCTGTTCAATGCCATTGAGACCATGCCGGCGGTGAAGCGCAAGGCTGAC 1146605 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||| || |||||| | || || | ||||| ||||| | | || ||| Sbjct 1146604 TGGGCCCTGTCCTGGATCTCTTCCAAGTCGGCCAACTTTGGGGAGCGCATCATTGCGTTT 1146545 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 || || || |||||||| || |||||||| ||||| |||| |||||||| ||| || Sbjct 1146544 GCCGCCGTCGAGGGCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAG 1146485 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || ||||| || || ||| ||||| ||||| ||| | | || |||||||| Sbjct 1146484 CGCGGCCTGATGCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAGGGTCTG 1146425 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 ||| | || ||||| ||| | | | | || || | || ||| | ||| Sbjct 1146424 CACTGTGACTTTGCGGTGCTGATGTTCCAG---CATCTGGTGCAGCGACCGAGGCGCGAG 1146368 Query 26074 ACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133 | || | |||||| || |||||||| || ||| ||||||| | Sbjct 1146367 CGCATCATCGAGATCATCCGCGACGCTGTGGACATTGAGCAGGAGTTCCTCACCGATGCC 1146308 Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193 | ||||||||| || ||| || |||||||||| |||| Sbjct 1146307 CTGCCGGTTAATCTGATCGGCATGAACTGTGACCTGATGTCGCAGTACATTGAGTTTGTG 1146248 Query 26194 GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTC 26253 ||||| | ||||||| | ||||||| | | | |||||| || || |||||| Sbjct 1146247 GCCGATCGTCTGCTGGTCGAGCTGGGCGTGGGAAAGATCTACAACACCAAGAATCCGTTC 1146188 Query 26254 GACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGC 26313 |||| ||||| | || ||| |||| || ||||||||||||||||| |||| ||| ||| Sbjct 1146187 AACTTCATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTTTGAGAAGAAGGTGGGC 1146128 Query 26314 GACTATCA 26321 || ||||| Sbjct 1146127 GAGTATCA 1146120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928785110111040