Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 188 1e-42
seq4678 174 3e-38
>seq4765
Length=3541379
Score = 188 bits (208), Expect = 1e-42
Identities = 521/790 (66%), Gaps = 13/790 (2%)
Strand=Plus/Minus
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|||||||| || ||||| | |||||| || |||| | ||| ||||| || ||
Sbjct 3009879 GCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGTACTCGACGATTTCTGTGCACAGA 3009820
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
||||||||||||||||| |||| | | ||||| ||| | ||| || ||||||
Sbjct 3009819 TTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGTTGCACGCATCCTTG 3009760
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893
||||||| | ||| ||||||||||| ||| ||| | | || | ||| ||
Sbjct 3009759 AAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGGCGAACCACAG-GGA 3009701
Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952
||| || | || |||| ||| | ||||||| || | || || || ||| |
Sbjct 3009700 CTGAGCCTTAACTGTCCGATTGGCCTTTCCCTCGGCCTCGT-ATTTAAGG--TACAGCTT 3009644
Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGAC 222011
||||||| || || || | || | |||||| |||||| || ||||| ||||| ||
Sbjct 3009643 CTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTGTGCGGG-CACATTAGGG 3009585
Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071
||||| | || | | ||| | || ||| ||||| || || ||||| || || | |
Sbjct 3009584 ACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCAGAGGGCATAGA 3009525
Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131
| ||||| | | || | ||||||| |||| |||| || |||| ||||| ||||| |
Sbjct 3009524 ATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTCAGTTCCAAGAACTCGA 3009465
Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191
| | || | |||||| ||||||| ||||| ||| | || ||||| |||||| |||||
Sbjct 3009464 AGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAGGCACCGGGCCGCTTGCCGCCAC 3009405
Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251
|||| ||||| || ||| | |||||||| || || | || || || || ||||
Sbjct 3009404 CCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGCAGCATGGGAACGAGGCCATTGG 3009345
Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGC 222311
| || || ||||| ||| | | || ||| | | | | | || || ||
Sbjct 3009344 AGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCACGGATGCAATGGACATTCAGGC 3009285
Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371
| || || || || || ||||||||||| ||| | | | | | ||||| |
Sbjct 3009284 CAATGCCGCCCGCCGACTTGGAGATCATGGCACAGTGTTCCACCGACTTAAAAATGCCTT 3009225
Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG---ATTTGGTGG 222428
| || || ||| | | | |||| || || || ||||| | ||| | || ||||
Sbjct 3009224 CGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGGACGAGAGCTGCGGCCGGTTCGTGG 3009165
Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488
| |||| ||||| ||||| ||||||||| ||| ||| | |||| || || ||
Sbjct 3009164 CAGCGGCG---AACAGGGTGGGCGAGGCGTGTGTGAAGAAGCGCTCTGACAACAAATTGT 3009108
Query 222489 ACGTCTCTAC 222498
| ||||| ||
Sbjct 3009107 ATGTCTCCAC 3009098
>seq4678
Length=1229792
Score = 174 bits (192), Expect = 3e-38
Identities = 471/728 (65%), Gaps = 9/728 (1%)
Strand=Plus/Minus
Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656
||| |||| |||||||| ||||| |||||||| || |||||||||||| ||| | ||
Sbjct 1146841 GTGCTGGCCTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTT 1146782
Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716
| | ||| || ||| | |||||| || || || || |||||||| ||||| ||
Sbjct 1146781 AGCCAGGAGGTACAGATCACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAG 1146722
Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCC 25773
|| ||||| || ||| |||| || | ||||| || |||||| ||| |
Sbjct 1146721 AACGTGCATTCGGAGATGTA---CAGTGTGCTGATCGACACTTACATTCGGGACCCACAC 1146665
Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833
|| | || ||||| |||||| ||| ||| || | ||| | |||||
Sbjct 1146664 CAGCGGGAATATCTGTTCAATGCCATTGAGACCATGCCGGCGGTGAAGCGCAAGGCTGAC 1146605
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
|||||| || |||||| | || || | ||||| ||||| | | || |||
Sbjct 1146604 TGGGCCCTGTCCTGGATCTCTTCCAAGTCGGCCAACTTTGGGGAGCGCATCATTGCGTTT 1146545
Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953
|| || || |||||||| || |||||||| ||||| |||| |||||||| ||| ||
Sbjct 1146544 GCCGCCGTCGAGGGCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAG 1146485
Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013
|| ||||| || || ||| ||||| ||||| ||| | | || ||||||||
Sbjct 1146484 CGCGGCCTGATGCCTGGTTTGACCTTCTCCAATGAGCTGATCTCCCGCGATGAGGGTCTG 1146425
Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073
||| | || ||||| ||| | | | | || || | || ||| | |||
Sbjct 1146424 CACTGTGACTTTGCGGTGCTGATGTTCCAG---CATCTGGTGCAGCGACCGAGGCGCGAG 1146368
Query 26074 ACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133
| || | |||||| || |||||||| || ||| ||||||| |
Sbjct 1146367 CGCATCATCGAGATCATCCGCGACGCTGTGGACATTGAGCAGGAGTTCCTCACCGATGCC 1146308
Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193
| ||||||||| || ||| || |||||||||| ||||
Sbjct 1146307 CTGCCGGTTAATCTGATCGGCATGAACTGTGACCTGATGTCGCAGTACATTGAGTTTGTG 1146248
Query 26194 GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTC 26253
||||| | ||||||| | ||||||| | | | |||||| || || ||||||
Sbjct 1146247 GCCGATCGTCTGCTGGTCGAGCTGGGCGTGGGAAAGATCTACAACACCAAGAATCCGTTC 1146188
Query 26254 GACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGC 26313
|||| ||||| | || ||| |||| || ||||||||||||||||| |||| ||| |||
Sbjct 1146187 AACTTCATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTTTGAGAAGAAGGTGGGC 1146128
Query 26314 GACTATCA 26321
|| |||||
Sbjct 1146127 GAGTATCA 1146120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928785110111040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |