Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_019515.1
Length=93839
Score E
Sequences producing significant alignments: (Bits) Value
seq4953 111 9e-20
seq5094 86.0 4e-12
>seq4953
Length=802672
Score = 111 bits (122), Expect = 9e-20
Identities = 206/297 (69%), Gaps = 8/297 (3%)
Strand=Plus/Minus
Query 22743 AATTTATCCGGAACAATAACACCGATTGACATAGATTGAATTCTGCTCTTTTCATCTACG 22802
|||||||| || |||| ||||| | ||| | | | | || | | ||||| || ||
Sbjct 185691 AATTTATCTGGCACAACCACACCAAGTGAAAGGGTGTTTACTCGGATTTTTTCGTCGGCG 185632
Query 22803 TTAATTCGTTTTGTATCTAACATGC---GGATAATGTCCATATGGAAGATATTTAAGTAA 22859
|| ||| |||| || || || | | || ||||| |||||| | | | | |||
Sbjct 185631 TT--TTCCTTTT-TAACTCCCAAGAATTGAATGATGTCAGGATGGAAAACACTAAGATAA 185575
Query 22860 GTTGCTCCTGCACCTTTTCGCTGTCCTAATTGGTTTGCGTAAGAGAATGCATCTTCTAAT 22919
| || ||||| |||| || |||| |||||| | || | ||| |||||||| |
Sbjct 185574 ACAACCCCAGCACCGTTTCTTTGGCCTAGTTGGTTGGAATAGGTGAAACTATCTTCTAGT 185515
Query 22920 AACTTCATTACTGGAACAATACCGCTACTTGCTCCCTCGATTTCTTTAATCGGGTCTGAA 22979
|||||||||||||||| || ||| || |||||| | || | |||||| || || |
Sbjct 185514 AACTTCATTACTGGAAGAACACCACTGGCTGCTCCTTGAATGTGTTTAATGGGATCACCA 185455
Query 22980 GTAGCTCTTATTTTAGATAAGTTTAA-TGCTACTCCACCGCCAATTTTCGATAACTG 23035
| |||||||| ||||| ||| |||| | | ||||| || |||||||| ||||| ||
Sbjct 185454 GCAGCTCTTAGGTTAGA-AAGATTAATTCCAACTCCTCCACCAATTTTGGATAATTG 185399
>seq5094
Length=366253
Score = 86.0 bits (94), Expect = 4e-12
Identities = 227/342 (66%), Gaps = 5/342 (1%)
Strand=Plus/Minus
Query 78345 TGTTCCTGTACTTGCGGTATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATG 78404
||||||| ||| || |||||||| ||||||| ||||| || || | || ||||
Sbjct 188680 TGTTCCTTTACCTGTTCAATATGATTACTGTAAATGTGAGCATCTCCTAGAGTATGAACA 188621
Query 78405 AAGTCTCCTACTTCCAGTCCGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAA 78464
|| || || || || || | | ||||| | | || | | || || |
Sbjct 188620 AAATCACCGGGCTCAAGACCTACCTCTTTTGCAATTAAGTTAGTCAAAAGAGCATAACTA 188561
Query 78465 GCAATGTTAAATGGAATTCCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTT 78524
|| |||||||| |||| ||| | ||| | ||| || || || || ||||| ||||||||
Sbjct 188560 GCGATGTTAAACGGAACTCCAAGGAAAATGTCGCCACTCCGCTGATACAACTGGCAACTC 188501
Query 78525 AGCTTTCCATCAACTGATACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATA 78584
|| ||||| || | | |||||||| || || | ||||| || || |||||||||
Sbjct 188500 AGTTTTCCGTCG--TTA-ACGTAAAATTGAAACATTACATGACACGGAGGGAGTGCCATA 188444
Query 78585 TCATCTAA-GTCAGCAGGATTCCAAGCAGACACAATATGTCTGCGTCCGTAAGGGTCTTT 78643
| || || ||| | |||||||| ||| ||||| || | | | || | ||
Sbjct 188443 -CTTCCAATGTCTTCTGGATTCCAGGCACTTACAATCATTCGTCTTGAATCTGGATTATT 188385
Query 78644 CATAATAGATTCTATTACATTAGCTATTTGGTCAATCGTTTC 78685
| |||| | ||| || ||||| ||||||||||| || ||
Sbjct 188384 CTTAATGGTTTCAATCACATTTTTAATTTGGTCAATGGTATC 188343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300141193193800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |