Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq4953 111 9e-20 seq5094 86.0 4e-12 >seq4953 Length=802672 Score = 111 bits (122), Expect = 9e-20 Identities = 206/297 (69%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 22743 AATTTATCCGGAACAATAACACCGATTGACATAGATTGAATTCTGCTCTTTTCATCTACG 22802 |||||||| || |||| ||||| | ||| | | | | || | | ||||| || || Sbjct 185691 AATTTATCTGGCACAACCACACCAAGTGAAAGGGTGTTTACTCGGATTTTTTCGTCGGCG 185632 Query 22803 TTAATTCGTTTTGTATCTAACATGC---GGATAATGTCCATATGGAAGATATTTAAGTAA 22859 || ||| |||| || || || | | || ||||| |||||| | | | | ||| Sbjct 185631 TT--TTCCTTTT-TAACTCCCAAGAATTGAATGATGTCAGGATGGAAAACACTAAGATAA 185575 Query 22860 GTTGCTCCTGCACCTTTTCGCTGTCCTAATTGGTTTGCGTAAGAGAATGCATCTTCTAAT 22919 | || ||||| |||| || |||| |||||| | || | ||| |||||||| | Sbjct 185574 ACAACCCCAGCACCGTTTCTTTGGCCTAGTTGGTTGGAATAGGTGAAACTATCTTCTAGT 185515 Query 22920 AACTTCATTACTGGAACAATACCGCTACTTGCTCCCTCGATTTCTTTAATCGGGTCTGAA 22979 |||||||||||||||| || ||| || |||||| | || | |||||| || || | Sbjct 185514 AACTTCATTACTGGAAGAACACCACTGGCTGCTCCTTGAATGTGTTTAATGGGATCACCA 185455 Query 22980 GTAGCTCTTATTTTAGATAAGTTTAA-TGCTACTCCACCGCCAATTTTCGATAACTG 23035 | |||||||| ||||| ||| |||| | | ||||| || |||||||| ||||| || Sbjct 185454 GCAGCTCTTAGGTTAGA-AAGATTAATTCCAACTCCTCCACCAATTTTGGATAATTG 185399 >seq5094 Length=366253 Score = 86.0 bits (94), Expect = 4e-12 Identities = 227/342 (66%), Gaps = 5/342 (1%) Strand=Plus/Minus Query 78345 TGTTCCTGTACTTGCGGTATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATG 78404 ||||||| ||| || |||||||| ||||||| ||||| || || | || |||| Sbjct 188680 TGTTCCTTTACCTGTTCAATATGATTACTGTAAATGTGAGCATCTCCTAGAGTATGAACA 188621 Query 78405 AAGTCTCCTACTTCCAGTCCGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAA 78464 || || || || || || | | ||||| | | || | | || || | Sbjct 188620 AAATCACCGGGCTCAAGACCTACCTCTTTTGCAATTAAGTTAGTCAAAAGAGCATAACTA 188561 Query 78465 GCAATGTTAAATGGAATTCCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTT 78524 || |||||||| |||| ||| | ||| | ||| || || || || ||||| |||||||| Sbjct 188560 GCGATGTTAAACGGAACTCCAAGGAAAATGTCGCCACTCCGCTGATACAACTGGCAACTC 188501 Query 78525 AGCTTTCCATCAACTGATACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATA 78584 || ||||| || | | |||||||| || || | ||||| || || ||||||||| Sbjct 188500 AGTTTTCCGTCG--TTA-ACGTAAAATTGAAACATTACATGACACGGAGGGAGTGCCATA 188444 Query 78585 TCATCTAA-GTCAGCAGGATTCCAAGCAGACACAATATGTCTGCGTCCGTAAGGGTCTTT 78643 | || || ||| | |||||||| ||| ||||| || | | | || | || Sbjct 188443 -CTTCCAATGTCTTCTGGATTCCAGGCACTTACAATCATTCGTCTTGAATCTGGATTATT 188385 Query 78644 CATAATAGATTCTATTACATTAGCTATTTGGTCAATCGTTTC 78685 | |||| | ||| || ||||| ||||||||||| || || Sbjct 188384 CTTAATGGTTTCAATCACATTTTTAATTTGGTCAATGGTATC 188343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300141193193800