Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq4198 100 4e-16 seq4761 86.0 1e-11 >seq4198 Length=487851 Score = 100 bits (110), Expect = 4e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct 394273 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 394215 Query 169792 GTCAGTCCTGCCATTTT 169808 |||| || |||| ||| Sbjct 394214 GTCACTCGCGCCACTTT 394198 >seq4761 Length=1439414 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 123071 TTGTCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATT 123130 ||||||||||||||||| ||| | || ||||||||| || ||||| || || ||||| Sbjct 1350399 TTGTCCTGTCAGCTGTACCAGAGGAGCGCTGACATGGGTCTGGGCGTGCCATTCAACATC 1350340 Query 123131 GCCTCTTACGCGCTCCTGATACACATGTTTGCCCA 123165 ||||||||||| || || | |||||| | ||||| Sbjct 1350339 GCCTCTTACGCCCTGCTTACCCACATGATAGCCCA 1350305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777582027423600