Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5094 154 1e-31 seq4998 143 2e-28 seq4765 116 2e-20 >seq5094 Length=366253 Score = 154 bits (170), Expect = 1e-31 Identities = 147/187 (79%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| ||||||||||| || || ||||||||| ||||||||||||| || |||||||| Sbjct 124288 GCAGTTATTACTGTTCCTGCTTACTTTAATGATGCTCAACGTCAAGCTACCAAAGATGCC 124347 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||| || ||| ||||| | | |||||||||||||| || ||||| ||||| Sbjct 124348 GGTAAAATTGCCGGACTTGATGTTAAAAGAATTATTAATGAACCTACTGCAGCTTCACTT 124407 Query 474857 GCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT---GT 474913 || |||||| | ||||| || |||||||| | ||| | ||| | | ||||| || Sbjct 124408 GCATATGGTTTAGATAAAAA---AGACAAAGATGAAAAAATCTTAGTTTATGATTTAGGT 124464 Query 474914 GGAGGTA 474920 ||||||| Sbjct 124465 GGAGGTA 124471 Score = 123 bits (136), Expect = 2e-22 Identities = 157/213 (74%), Gaps = 16/213 (8%) Strand=Plus/Minus Query 290747 GAAATATCTAATGTTCCTGCACCAAAATCGTATATAATAACATTACCTCCATTTTTAT-- 290804 |||| ||| || || ||| |||| ||||| ||| | ||| ||| |||| || Sbjct 124484 GAAACATCAAAAGTACCTCCACCTAAATC--ATAAACTAAGATT-------TTTTCATCT 124434 Query 290805 TTGTCCAAGTTTTGCTTCCAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAA 290864 ||||| |||| || || |||||||| | ||||||||| || |||||||| |||| Sbjct 124433 TTGTC----TTTTTTATCTAA-ACCATATGCAAGTGAAGCTGCAGTAGGTTCATTAATAA 124379 Query 290865 TTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCAT 290924 ||||| |||||||| || |||||||| | | |||| || || || ||||| |||| Sbjct 124378 TTCTTTTAACATCAAGTCCGGCAATTTTACCGGCATCTTTGGTAGCTTGACGTTGAGCAT 124319 Query 290925 CATTAAAATAAGCAGGGACTGTAATAACAGCTT 290957 ||||||| |||||||| || |||||||| |||| Sbjct 124318 CATTAAAGTAAGCAGGAACAGTAATAACTGCTT 124286 Score = 123 bits (136), Expect = 2e-22 Identities = 206/298 (69%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 475884 TTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTA 475943 |||| || |||||| | |||||||| ||||||| | || || | | ||||| | | Sbjct 125039 TTGATGTTACTCCATTGTCATTAGGCATTGAAACCATGGGTGGTGTATTTACTAAGTTAA 125098 Query 475944 TTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATA 476003 | || ||||| ||| | |||||| ||| ||| || ||| || ||| |||||| Sbjct 125099 TCGATAGAAACACTACAATCCCAACTTCAAAGTCACAAACATTCTCAACTGCCGCTGATA 125158 Query 476004 ATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATA 476063 ||||||| |||| ||| || | || |||||||| | | | || ||| ||| Sbjct 125159 ATCAAACTGCTGTTGACATTCATGTTTTACAAGGTGAACGTCCAATGGCTGCTGATGATA 125218 Query 476064 ACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAA 476123 | ||| || ||| | | | ||||||| |||| || ||||| ||||| |||| Sbjct 125219 AGTCACTAGGTCGTTTCCAATTAACTGATATTCCTGCTGCACCAAGAGGTGTTCCACAAA 125278 Query 476124 TTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 |||||||||| |||||||||||| ||| || ||| |||||||| | ||| ||||| Sbjct 125279 TTGAAGTTACCTTTGATATTGATAAAAACGGAATTGTTAATGTTTCCGCTAAGGATAA 125336 >seq4998 Length=2541160 Score = 143 bits (158), Expect = 2e-28 Identities = 366/548 (67%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 426810 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGAGTGTTCCAGCATGGCAAGGTCG 426869 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || |||||||| |||||| | || || || | Sbjct 426870 AGATCATCGCCAACGACCAGGGTAATCGTACCACACCATCCTATGTTGCCTTCACCGATA 426929 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || || ||||| || || | || | ||| || || | || | Sbjct 426930 CGGAGCGTCTGATCGGCGATGCCGCCAAGAACCAGGTGGCAATGAACCCGACCCAGACGA 426989 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | | ||||| || || || || || | | || || ||||| | Sbjct 426990 TCTTCGATGCCAAGCGTCTCATTGGCCGCAAGTTCGACGACTCTGCCGTGCAGTCTGACA 427049 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || |||| | | |||| ||| || || | || || | | | Sbjct 427050 TGAAGCACTGGCCCTTCGAGGTTGTCAGCGTTGATGGCAAGCCCAAAATCGAGGTGACCT 427109 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 427110 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCGATGGTGCTCACCAA 427167 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | || | |||| | |||| ||| ||||| || || | || || || || Sbjct 427168 GATGAAGGAGACTGCCGAG-GCCTATC-TGGGCAAGACTGTGACCAACGCGGTCATCACC 427225 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || || || ||||| || || || ||||| |||| || || Sbjct 427226 GTGCCGGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGATGCCGGAACCATCGCC 427285 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| ||||| | ||||| ||||| || || || || || || |||| || ||||| Sbjct 427286 GGTCTGAATGTGCTTCGTATCATTAACGAGCCCACGGCTGCGGCCATTGCCTACGGTCTG 427345 Query 474869 GATAAGAA 474876 || ||||| Sbjct 427346 GACAAGAA 427353 >seq4765 Length=3541379 Score = 116 bits (128), Expect = 2e-20 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || | || | ||| || || || ||||| |||| || || Sbjct 2921405 ACGAAGGCGGAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 2921464 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| |||||||| || ||||| || ||||| ||||||||||| Sbjct 2921465 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCC 2921524 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| ||||| |||||||| ||||||| ||| ||||| || | || ||||| Sbjct 2921525 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAG 2921584 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| ||||| || || Sbjct 2921585 AGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTG 2921623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267958677565868