Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq4953 111 2e-19 seq4564 89.7 7e-13 >seq4953 Length=802672 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 53735 TGCCAATGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA 53794 || |||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||| Sbjct 221828 TGTCAATGGAGAATAACGGGATCGAACCGTTGACCTCCTGCTTGCAAAGCAGGTGCTCTC 221887 Query 53795 CCAACTGAGCTAATTCCCCAA 53815 ||| ||||||||||||||||| Sbjct 221888 CCAGCTGAGCTAATTCCCCAA 221908 >seq4564 Length=637309 Score = 89.7 bits (98), Expect = 7e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48074 CACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133 ||||||| || || | ||||||||| ||||| ||| |||| || ||||| ||||| Sbjct 89461 CACCATATGGCGACCTTGGATAGAACGGTGTCTGCTCGTTCTGCGGCGTCTCCACCACCT 89520 Query 48134 TACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCA 48193 | || || || || ||||| |||||||||| || || || | ||| || || | Sbjct 89521 TCCCGTATAGCTCCGAAGTGGAGGCTTGATAGAATCGCACACTTTTTTCTATGCCACACG 89580 Query 48194 AACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGG 48253 ||| | || || || | | ||| ||||| | ||||| || ||||||||||| Sbjct 89581 TACGTATGGCGTCCAGGATGCGCAGAGTGCCCACTGCATCCACCTCGGCAGTATACTCGC 89640 Query 48254 GCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTC 48305 | ||||| || |||||||| || || ||| | ||||| || ||||| Sbjct 89641 TAAGGTCAAAGGAGACCTTTACGTGCGATTGCGCCGCCAGATTGTAGATCTC 89692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665451633666120