Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4765 168 8e-37 seq4678 154 2e-32 seq4198 113 5e-20 seq4564 86.0 7e-12 >seq4765 Length=3541379 Score = 168 bits (186), Expect = 8e-37 Identities = 880/1392 (63%), Gaps = 32/1392 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| || || || || ||||| || |||||||| ||| | | Sbjct 3009038 CCGCAGCACATGCTGATGCGCGTGGCGATTGGAATCCATGGTGAAGACATCGATGCCGCT 3009097 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 ||||||||||| | | |||| | | | |||| ||||| | || ||||| ||| Sbjct 3009098 GTGGAGACATACAATTTGTTGTCAGAGCGCTTCTTCACACACGCCTCGCCCACCCTGTTC 3009157 Query 75332 AATGCTGGTAC--ACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || ||| | |||||| | || |||||||| | ||| | || Sbjct 3009158 GCCGCTGCCACGAACC--GGCCGCAGCTCTCGTCCTGCTTCCTCCTGACCATGACATCGG 3009215 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 75447 | || ||| | || || | | || || | | || || | ||||| |||| ||| Sbjct 3009216 ATTCGATCGAAGGCATTTTT--AAGTCGGTGGAACACTGTGCCATGATCTCCAAGTCGGC 3009273 Query 75448 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 75507 || || ||||| || | ||||| | | ||||| || || | || || Sbjct 3009274 GGGCGGCATTGGCCTGAATGTCCATTGCATCCGTGCCAAGGGCACTTCCATATGTGGCAC 3009333 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 |||||| || |||| | |||| ||||| || || || ||| || || || Sbjct 3009334 AAATGGCACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCAACAATGTGGCTCGGTA 3009393 Query 75568 TGTAAATCAAGCGGGGCGTCGCAAGGGGTCCA------TCGCGGTCTACTTGGAACCATG 75621 || | || | | |||| ||||| || || | || |||| ||||| || || Sbjct 3009394 CGTGGACCAGG-GTGGCG--GCAAGCGGCCCGGTGCCTTTGCCATCTATTTGGAGCCCTG 3009450 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 ||| | ||| || | |||||| | || | | ||| || | || ||| ||| Sbjct 3009451 GCACTCGGATGTCTTCGAGTTCTTGGAACTGAAAAAGAACACCGGCAAGGAGGAGAATCG 3009510 Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 | | ||||| || | |||| ||||| || || || || |||||||| || |||| Sbjct 3009511 TGCTCGCGATCTATTCTATGCCCTCTGGATACCCGATCTCTTTATGAAGCGCGTCGAGGC 3009570 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 | || | ||||| || | || || ||||| || || || || | | ||| Sbjct 3009571 GAATGAAAACTGGTCCCTAATGTGCCCGCACAAGTGTCCCGGCCTGCAGGATGTGTGGGG 3009630 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 || |||||||| || ||| || || || | ||||| | |||||| ||| || Sbjct 3009631 CGACGAGTTTGAGAAGCTGTACCTTAAATACGAGGCCGAGGGAAAGGCCAATCGGACAGT 3009690 Query 75862 ACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 || | | | | ||| || || || | | ||| ||||||||| | || | Sbjct 3009691 TA-AGGCTCAGTCCCTGTGGTTCGCCATCATCGAGGCGCAGGTGGAGACTGGCAATCCGT 3009749 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 | ||||| | ||||||||| || |||| |||||| || || ||||| |||| || |||| Sbjct 3009750 ACATGCTCTTCAAGGATGCGTGCAACAGGAAGAGCAATCAGCAGAATGTGGGCACCATCA 3009809 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 || || ||||| ||||| ||||| | |||||| | || |||| || || | Sbjct 3009810 AGTGCAGCAATCTGTGCACAGAAATCGTCGAGTACTCCTCGCCCGACGAGATCGCCGTCT 3009869 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAAT---GAAGAGACTCGCACTTTTG 76097 |||| |||| || ||||| || | || ||| | ||| |||| | || | Sbjct 3009870 GCAACCTGGCGTCCATCGCTCTCAACATGTTTGTGACGCCCGAAAAGAC--GTAC----G 3009923 Query 76098 ATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTG 76157 ||| | | || || | || |||| |||| ||| |||| ||||| ||| | |||| Sbjct 3009924 ATTTTAAGAAGCTGAAGGAGGTCACCAAGACTGTGGCCAAGAATCTGAACAAGATTATTG 3009983 Query 76158 ACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTG 76217 ||| || | ||||||| | | || | || || |||||| | || | || |||| Sbjct 3009984 ACATCAACTATTATCCCCTGCCGGAGGCCAGGAAATCGAATATGAGGCATCGCCCCATTG 3010043 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAG 76277 | | || ||||| || ||||| |||| || ||| || | | | | | || | Sbjct 3010044 GCATTGGCGTTCAGGGACTCGCCGATGCCTTGATTCTGATGAGATTCCCCTACGAAAGCG 3010103 Query 76278 ATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGG 76337 | || || ||||| | ||||||||||| || ||| | | | ||||||| | Sbjct 3010104 AGGAGGCGGGTCTCCTGAATCAACAGATCTTTGAAACGATATATTATGGAGCCCTGGAAG 3010163 Query 76338 CGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGT 76397 | ||||||||| |||| | | | |||| | ||||| || | ||||| |||| | Sbjct 3010164 CCAGTTGTGAACTGGCCCAGGTCGAAGGCCCGTATGAAACCTACGAGGGCAGCCCCGTGA 3010223 Query 76398 CCCAAGGGGTGCTTCAGTTTGATATGTGGG--AAGGTGAAACCAAGCTCAACTACGACTG 76455 | | || | || |||| || ||||||| ||||| | ||| | | || ||||| Sbjct 3010224 GCAAGGGAATCCTCCAGTACGACATGTGGGACAAGGT--ACCCACGAACCTCTGGGACTG 3010281 Query 76456 GGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 76515 || || |||||| |||||| | | || || | ||| ||| | |||| || Sbjct 3010282 GGCAAAGCTGAAGGAATCGATCAAGAAACACGGCGTTAGAAACTCTCTGCTCGTGGCCCC 3010341 Query 76516 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACAC 76575 ||||| || || ||||| || || || |||| || || |||| ||| || || ||||| Sbjct 3010342 CATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAACGAATCCTTCGAGCCGTACAC 3010401 Query 76576 AACAAACATCTA 76587 || || ||||| Sbjct 3010402 CACGAATATCTA 3010413 >seq4678 Length=1229792 Score = 154 bits (170), Expect = 2e-32 Identities = 292/427 (68%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 |||||| | |||||||||| || ||||| || |||||| ||| || | | Sbjct 1146562 GAGCGCATCATTGCGTTTGCCGCCGTCGAGGGCATTTTCTTCAGCGGCAGCTTTGCCTCC 1146503 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 |||| ||| |||||||||| || || ||||| || | |||||| ||||| || || Sbjct 1146502 ATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGTTTGACCTTCTCCAATGAGCTGATC 1146443 Query 65197 TCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAAT 65256 ||||| ||||||||||| ||| || ||||| ||| | | ||| || | || | Sbjct 1146442 TCCCGCGATGAGGGTCTGCACTGTGACTTTGCGGTGCTGATGTTCCAGCATCTGGTGCAG 1146383 Query 65257 AGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGG 65316 |||| | ||| ||| || ||| | || || || || |||||| | | | Sbjct 1146382 CGACCGAGGCGCGAGCGCATCATCGAGATCATCCGCGACGCTGTGGACATTGAGCAGGAG 1146323 Query 65317 TTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAG 65376 ||| || || || || || |||||| ||||| ||||||| ||| |||||| || Sbjct 1146322 TTCCTCACCGATGCCCTGCCGGTTAATCTGATCGGCATGAACTGTGACCTGATGTCGCAG 1146263 Query 65377 TACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTGGAA 65435 |||||||||| |||| | |||||||| || | || |||| ||| | || | || Sbjct 1146262 TACATTGAGTTTGTGGCCGATCGTCTGCT-GGTCGAGCTGGGCGTGGGAAAGATCTACAA 1146204 Query 65436 CGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTT 65495 | | |||||||| || |||| ||||| | || || ||||| |||||||||||||| Sbjct 1146203 CACCAAGAATCCGTTCAACTTCATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTT 1146144 Query 65496 TGAGAAG 65502 ||||||| Sbjct 1146143 TGAGAAG 1146137 >seq4198 Length=487851 Score = 113 bits (124), Expect = 5e-20 Identities = 332/502 (66%), Gaps = 26/502 (5%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||| | |||||||| | || |||| |||||| | || || ||||||||||| || Sbjct 58271 TGATGTAGCCGGGATTGATGAAGCTAAAGGGGAACTTCAGGAAATCGTGGATTTTCTGAA 58212 Query 175251 GCAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCG 175308 | || | ||| ||| | | || | || || ||| ||||| || || | | Sbjct 58211 --AGACCCACAGAAGTTTACGCGCTTGGGCGGTAAAATTCCCAAAGGCGTGCTGCTTGTG 58154 Query 175309 GGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC 175368 || ||| || || || || ||||| | ||||| ||||| || |||||| | ||||| Sbjct 58153 GGGCCGCCGGGCACTGGTAAAACCCTGTTGGCCCGCGCCATTGCAGGTGAAGCCAATGTA 58094 Query 175369 CCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 || ||| | ||| ||||| | |||||||||| ||||| || ||||| ||||| Sbjct 58093 CCGTTCTTTACCA--TCTCTGGTTCCGACTTTGTGGAAATGTTCGTAGGTGTTGGTGCAT 58036 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCG---AAAATCA--ACCATGTATTGTCTT 175481 | || || || | || ||| | | | ||||||| || || ||| |||| Sbjct 58035 CCCGTGTGCGTGACATGTTCGAA-----CAGGGTAAAAAATCAGCTCCTTGCATTATCTT 57981 Query 175482 CATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGT-GGTATGCCAGCAAATG 175540 ||||||||| |||||||| || || || || | || ||| | || | || |||| Sbjct 57980 CATTGATGAAATTGATGCCGTTGGTCGCCATCGTGGTGCAGGTATGGGTGGCGGC-AATG 57922 Query 175541 ACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATG 175597 | ||| | || || ||| | || || | || ||||||||||| ||||| ||||| Sbjct 57921 ATGAGCGCGAGCAGACACTGAACCAGATGCTGGTTGAGATGGATGGTTTTGAAAGCAATG 57862 Query 175598 AGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCC 175657 | ||| | | | ||||| ||||| || || |||| | ||||| || | | Sbjct 57861 A---AGGCGTGATCCTGATTGCCGCCACCAACCGTCCGGATGTGCTTGACCCGGCATTGC 57805 Query 175658 TTCGCCCGGGTCGTTTTGATCG 175679 | || || |||||||| || || Sbjct 57804 TGCGGCCCGGTCGTTTCGACCG 57783 >seq4564 Length=637309 Score = 86.0 bits (94), Expect = 7e-12 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 177625 TGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCG 177684 || ||||| | ||||||||| || || ||||| ||||||| ||||| || | | | Sbjct 89156 TGCAGCATCATCCACATGGCCTCCACGTAGTCGCTGGCATGCCCCCAATCGCGCTTCGAG 89215 Query 177685 TTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTGACGC-CATC 177743 | || || || || |||| | |||| ||| ||| ||| | || | | | | || Sbjct 89216 TCCAGATTGCCCAGCTCAAAGTACTCCATCTG--CTTCAACAGAATCTTGGCCACACTTC 89273 Query 177744 AG-TAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGA 177802 | | || ||| ||| ||||||| | || |||| ||| |||||||||||||||| Sbjct 89274 TGGTGATTTTCCGTGTAACAAAGTTCTCGCCACGTCGCGGACTCTCGTGGTTGAAGAGGA 89333 Query 177803 TTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAG 177855 | ||| |||||| ||||| |||| |||||||| || |||||| |||| Sbjct 89334 TCCCGTTGCAGGCGTACATGTTGTAGGCCTCTCGGTAGTTGATGACGATCCAG 89386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596531262946080