Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq2670 138 4e-28 >seq2670 Length=149592 Score = 138 bits (152), Expect = 4e-28 Identities = 239/341 (70%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 44672 CGGCCCTGCCCGTTCACCTTCGA-CTGGGATGCGAGATCTTGGGGACTTGGGATGTAGAA 44730 |||||||||| ||| || |||| ||||| || | || || || || | ||| || Sbjct 63713 CGGCCCTGCCGGTTTAC-TTCGCTCTGGGCGGCCATATGTTCTGGCGCAGGCAGGTAAAA 63655 Query 44731 CTCACCCGGCATGATCGAATAGCGGGCTGAGTATTCATTCACGTTGGCCGTCCGGTGACG 44790 |||| || || |||||||| || || |||||||||||| ||||| | || || || Sbjct 63654 TTCACTGTCCAGAATGGAATAGCGTGCCGAATATTCATTCACGCTGGCCATGCGATGGCG 63595 Query 44791 GATCCATTGGCGGGCCACAAACACGGGCAGTTTGACATGAAGTTTGATCTCACAACCCTC 44850 ||||| || || |||||||| | ||||||||||| |||| ||| |||||||| || Sbjct 63594 AATCCACTGCCGCGCCACAAAAATCGGCAGTTTGACGTGAAATTTCATCTCACACATTTC 63535 Query 44851 AAACGGGCTGGTGTGCCAATGGCGCATAAGGTAGCGGATTAGGTCGCGGTCCTTGCTGAC 44910 |||||| || || | ||||||||| || || ||||| | | | || ||| |||| Sbjct 63534 AAACGGTGAGGAATGGCGATGGCGCATCAGATACCGGATCA-GCCCCGCATCTT-CTGAA 63477 Query 44911 ACCCT--TGGTGCCCTGACCGTAGGATACGCGGGCCATCTGGACGATAGCGCCGTCCGTG 44968 ||| | ||||||| |||| || || ||||| || ||| || || || | || Sbjct 63476 ACCTTGCGGGTGCCCCGACCATATGAAACGCGTGCAGCCTGCACAATGGCAGCATCATCC 63417 Query 44969 CCCATGTAGTCGATTGGTCGGACAAAGCCATGATCTAGGAC 45009 ||||| ||||| || || | || |||||||| || || Sbjct 63416 CCCATATAGTCAATAACACGCAAGAACCCATGATCCAGCAC 63376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182132880222640