Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq1269 100 7e-17 >seq1269 Length=15413 Score = 100 bits (110), Expect = 7e-17 Identities = 175/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 16356 GAAACATATCCAAGCATTCCGGATCCGCTTCGCATCTGGCTTCGAGATCCTCGCCCTCAG 16415 |||| || || ||| || || || || |||||||| | || | || || || Sbjct 10402 GAAAGATGTCAAAGTCTTTCGTATGGATTTTGCATCTGGGAACAAGGTTCTGGCTCTTCC 10343 Query 16416 CTCTGCGCCGCGCGGGCTGCGCGGCAAGCAGGGTATGGTCATCATCGATGAGGCTGCCTT 16475 ||||| |||||| | | ||||||| | |||||| |||| || || ||||| || ||||| Sbjct 10342 CTCTGTGCCGCGTGCGTTGCGCGGTATGCAGGGATTGGTGATTATTGATGAAGCCGCCTT 10283 Query 16476 CGTCGATAGCCTCGACGAGCTGCTCAAGGCCGCGCTCGCCTTCCTGATGTGGGGCGGGCA 16535 | ||| || || || || || || || || || || || |||||||||||||| | Sbjct 10282 CCATGATGATCTGGAAGAACTTCTGAAAGCTGCTCTGGCGTTGCTGATGTGGGGCGGCAA 10223 Query 16536 GGTGGTCGTATGCTCGACGCATAACGGCACCGAAAACCCGTTCAACCAGGCGATCCAGGA 16595 |||| | || | || ||||| ||| | ||||||||||| | | | ||||| Sbjct 10222 GGTGCTTGTTATCAGCACCCATAATGGCGACACGAACCCGTTCAATCTCCTGGTGCAGGA 10163 Query 16596 CATCCTCGCCGGGCG 16610 |||||| |||| || Sbjct 10162 CATCCTGTCCGGACG 10148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128609747975906