Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_021309.1 Length=74711 Score E Sequences producing significant alignments: (Bits) Value seq4198 129 3e-25 >seq4198 Length=487851 Score = 129 bits (142), Expect = 3e-25 Identities = 451/699 (65%), Gaps = 9/699 (1%) Strand=Plus/Plus Query 64750 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 64809 || || ||||| || || || | | ||||| || ||||| || || |||| || Sbjct 210576 GATGTTATTCCTACTGGTTCCCTTGGGCTGGATATTGCGCTGGGTATTGGTGGGTTGCCC 210635 Query 64810 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 64869 | ||||| ||||||||||| ||||| |||||| || || || | || || || Sbjct 210636 CGTGGCCGTGTGGTGGAAATTTACGGGCCAGAAAGCTCTGGTAAAACCACGCTTGCGCTG 210695 Query 64870 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 64929 || || | || | || || ||| ||||||| || | || || || ||||| Sbjct 210696 CATGCTATTGCAGAAGCACAAAAGCGTGGTGGCACTTGTGCTTTTATTGATGCCGAGCAT 210755 Query 64930 TCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 64989 | ||||||||| || ||||| ||| || ||||| | || ||||| || | Sbjct 210756 GCGTTGGACCCCGGTTATGCCAAAAAGCTGGGCGTGGATGTAGATAACCTGCTGATCAGC 210815 Query 64990 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65049 ||||| || | || || ||||| |||| || | || ||||| || |||| Sbjct 210816 CAGCCAGATGCGGGTGAACAGGCGTTGGAAATTGCAGATACACTCGTGCGATCCGGCGCT 210875 Query 65050 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 65109 | | | | || || || ||| || || |||||||||||||| || || ||||| Sbjct 210876 ATTGACGTTTTGGTGGTAGATAGTGTTGCAGCACTGGTGCCGCGCGCAGAACTGGAAGGA 210935 Query 65110 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 65169 ||||| || || || || || ||||| || ||||| | ||| ||||| |||| ||| Sbjct 210936 GACATGGGCGATAGCCATGTTGGCCTTCATGCGCGTTTGATGAGCCAGGCTTTGCGTAAG 210995 Query 65170 CTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 65229 || || || || | | || |||| || |||| | | | | |||||| | ||| | Sbjct 210996 CTTACGGGTACGGTGGCACGCTCCAATACTCTGATGATTTTCCTGAACCAGATCCGCCTG 211055 Query 65230 AAGATCG--GCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGA 65287 || || | | | || | || ||| || || |||||||| || || || ||| Sbjct 211056 AAAATTGGTGTGATGTTTGGTA--ATCCG---GAAACAACCACGGGTGGTAATGCCCTGA 211110 Query 65288 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 65347 |||||| | || || || |||||| | || ||||||| | ||||| |||| Sbjct 211111 AGTTCTATTCTTCCGTGCGTATGGATATTCGCCGCATCGGGTCTATCAAGGACAAGGATG 211170 Query 65348 AGGCTGTC-GGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCAC 65406 ||| || | || || | || || || || || || || |||||| |||| || || | Sbjct 211171 AGG-TGACAGGTAATCAGACGCGCGTAAAGGTTGTTAAAAACAAGATGGCGCCACCTTTC 211229 Query 65407 CGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 65445 || | | || || || ||||||| || |||||| Sbjct 211230 CGTCAGGTAGAATTTGATATCATGTACGGCGAAGGCATC 211268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238935428338672