Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq16 136 1e-26 seq4198 129 2e-24 seq4903 111 5e-19 seq30 84.2 6e-11 >seq16 Length=193047 Score = 136 bits (150), Expect = 1e-26 Identities = 335/496 (68%), Gaps = 14/496 (3%) Strand=Plus/Plus Query 288853 TCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCC 288912 ||||| | ||| | |||||| || ||||| || | | ||| | | ||| ||||| || Sbjct 6905 TCAAATCGACCTGGACGAGTCAAAGCTGGATCAAGAACATCAGAACGGTTAGTTGCGGCA 6964 Query 288913 AATACAACAATAGATTCGGTTTGCT-TAAATCCATCCATACTTGTTAAAATTTGATTAAG 288971 | |||| | | ||| || || |||| |||||||| ||| | ||||||||| Sbjct 6965 ATGACAATGACACCTTCA-TTCCCTGTAAAACCATCCATTTCAACTAATAGTTGATTAAG 7023 Query 288972 TGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACC 289031 |||||||| | |||||| | || | | || ||| ||| | | |||| | || Sbjct 7024 GGTTTGTTCACGTTCATCGT--GACCGCCGCCCATT--CCGGATC-CACGTTTTCGT-CC 7077 Query 289032 AACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAA 289091 ||| ||||||||||| ||||| || || | || | ||||| | || ||||| Sbjct 7078 AACGGCATCAATTTCATCAATAAAGATGATTGCTGGTGCATTTTTCTTGGCTTGGGCAAA 7137 Query 289092 TAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGA 289151 ||| ||||| || ||| || |||| ||| ||| ||||||| || || || || | || Sbjct 7138 TAAATCTCTAACCCGGCTAGCACCAACACCCACAAACATTTCAACGAAATCTGATCCAGA 7197 Query 289152 TACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTAC 289210 || | |||| ||||| ||||||||||| || || || || | || || | ||||||| Sbjct 7198 TAAT-GAATAGAATGGAACATTTGCTTCACCAGCAACCGCTTTAGCTAGCAAGGTCTTAC 7256 Query 289211 CTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT--T 289268 | || ||||| |||||||| | || ||| || || || | || ||| || | | Sbjct 7257 CGGTACCAGGAGGTCCCTCAAGTAAAACACCTTTGGGAATGACGGCACCA--AGTTTAGT 7314 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 | |||||| || ||| || ||||| |||| ||| | ||||| | ||| | ||||| Sbjct 7315 AAATTTCTTCGGATCCTTCAAGAATTCAACAACTTCAACCAGTTCTTGTTTCTCTTCATC 7374 Query 289329 ACATCCTGCTACATCA 289344 || || |||||| Sbjct 7375 TTCACCAGCAACATCA 7390 >seq4198 Length=487851 Score = 129 bits (142), Expect = 2e-24 Identities = 232/330 (70%), Gaps = 12/330 (4%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGA--ATTTTGTCTCGCAATT 289086 |||||| ||||||||||| |||||||| || | || |||| ||||| | | | || Sbjct 57956 ACCAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTACC-CTGTT 58014 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | || | || | ||||||||||| |||| ||| || ||||||| ||||| || ||| Sbjct 58015 -CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAA 58073 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || | || ||| | |||||| ||||| ||||| | || | |||| || || Sbjct 58074 CCAGAGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 58133 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTT---GCCCCAGCA 289263 ||||| || || || || ||| | | || || ||||||| | |||| |||| ||| Sbjct 58134 TTACCAGTGCCCGGCGGCCCCACAAGCAGCAC-GCCTTTGGGAATTTTACCGCCCAAGC- 58191 Query 289264 GACTTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | || | |||| ||| ||||| | ||| || || ||||||| |||||| ||| || Sbjct 58192 -GCGTAAACTTCTGTGGG-TCTTTCAGAAAATCCACGATTTCCTGAAGTTCCCCTTTAGC 58249 Query 289323 CTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||||| || ||||||||| |||| || Sbjct 58250 TTCATCAATCCCGGCTACATCATCAAACGT 58279 >seq4903 Length=2073822 Score = 111 bits (122), Expect = 5e-19 Identities = 186/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 ||||| |||||| | ||| |||||||||||||||||| | ||| || || || ||| Sbjct 76497 TCCATGGCCTTGATGAGACGTCGCTGAATATAACCAGTTTCGGCTGTCTTAACGGCGGTA 76556 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| ||||||| ||||| |||||||| | | ||| ||| | || Sbjct 76557 TCAATAAGACCCTCACGACCTCCCATGGCATGGAAATAGAACTCAGAGGGTGTCAAACCG 76616 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 | | | |||| |||| || |||||||||| |||||| || || |||| | || Sbjct 76617 GCCAGATAGGAATTCTCCACAAAACCACGCGACTCGGGACCATAATCATCCTTGATGAAA 76676 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || |||| || | || | || || || ||||| || || || || |||||||| Sbjct 76677 TGCGGCAATGTGCGCTTACGGAATCCATAGGGTATACGTTTACCCTCCACATTCTGCTGG 76736 Query 302815 CCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| || | ||| | ||| || || || Sbjct 76737 CCCACACAGGCAATAACCTGGGAGATGTT 76765 >seq30 Length=78726 Score = 84.2 bits (92), Expect = 6e-11 Identities = 144/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| |||||||| ||| || ||||||||||||||||| || || || ||| || | Sbjct 16759 CGATTGTCATACGCGAGGGGATGGCATGGGGATTGATGATAATATCCGGCGCCAGGCCCT 16818 Query 251903 CAGCA-GTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCC 251960 | ||| ||||||| |||||||| | | | || || | || ||||||||| || || Sbjct 16819 C-GCAGGTGAAGGCCATATCCTCCTGC-CGGTACTGAATACCGCAAGTTCCCTTCTGCCC 16876 Query 251961 GTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTT 252020 |||||| || ||| || |||||||| || ||| || | | ||||| ||| Sbjct 16877 GTGACGCGAGGCGAATTTGTCACCAATTTGCGGGATGCGCACCGATCTCACGCGAATCTT 16936 Query 252021 ACAGAAGTTGTAACCATCACCGTT 252044 ||||| ||||| || || | ||| Sbjct 16937 GCAGAACTTGTAGCCCTCGCTGTT 16960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471720652754517