Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq4953 102 9e-17 seq4968 86.0 7e-12 >seq4953 Length=802672 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 9771 TTGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 9830 ||||||||||||||||| ||| ||||| |||||||||||||||||| |||| |||||||| Sbjct 221908 TTGGGGAATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGAGGTCAACGGTTCGA 221849 Query 9831 GTCCGCTATTCTCCAT 9846 ||| |||||||||| Sbjct 221848 TCCCGTTATTCTCCAT 221833 >seq4968 Length=441983 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 4931 GGGCGAATAGCTCAGCGGTAGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCGATCC 4990 |||| | ||||||||||||||||| ||||||||||||||| |||||| |||||||||| Sbjct 397420 GGGCAATTAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGATGGTCGGCGGTTCGATCC 397479 Query 4991 CCTCTTCGCCCA 5002 | || | ||||| Sbjct 397480 CGTCATTGCCCA 397491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549587079890520