Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_021861.1 Length=30910 Score E Sequences producing significant alignments: (Bits) Value seq4953 89.7 1e-13 >seq4953 Length=802672 Score = 89.7 bits (98), Expect = 1e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 5079 TTTCAAAAATGCCAATGGAGAACGTGAAACAGATTTTATTAACTGTGTTATCTGGCGACA 5138 ||||| ||| | ||||| || || ||| | || || | ||||||||||| |||||| | Sbjct 673209 TTTCACCAATTCGAATGGTGATCGGGAAGCTGACTTCGTCAACTGTGTTATTTGGCGAAA 673150 Query 5139 ACAAGCTGAAAATATGGCAAATTTCACACATAAAGG-AAGCTTGATTGGTATCACTGGTA 5197 | ||||||||| | || || ||| ||||| || |||| |||| ||| ||| Sbjct 673149 ATCAGCTGAAAACTTTGCCAACTTCGTGCATAAGGGTTCACTTG-TTGGAATCGAAGGTC 673091 Query 5198 GAATCCAAACTCGAAACTATGAAAATCAACAAGGACAACGTGTTTACGTTACTGAAGTTG 5257 | || || || ||||| || || || | || || ||||| ||||| ||||| ||||| | Sbjct 673090 GGATTCAGACCCGAAATTACGAGAACAAGCAGGGCCAACGAGTTTATGTTACCGAAGTAG 673031 Query 5258 TTG 5260 ||| Sbjct 673030 TTG 673028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98784368907824