Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4523 150 1e-31 seq4863 86.0 5e-12 >seq4523 Length=700759 Score = 150 bits (166), Expect = 1e-31 Identities = 154/199 (77%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGC 34506 ||||| ||||||| |||||| || || ||||| || || || ||||||| ||||| | Sbjct 14567 GTTTGGGCGCCCAACTCGCATCCAAAATACTTGGTTGGATACGTGGCCGGTCGTCCGATG 14626 Query 34507 GCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCG 34566 ||| || | |||| ||||||||| | || ||||| ||||| || ||||| || ||| Sbjct 14627 GCCCGTGCCACCTCGGCCATGTTGACCAGAACGGTCTTAATGCCATTTCCCTTGCCCTCG 14686 Query 34567 ACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGT 34624 ||||| || |||| ||| ||||| |||||||||||||| ||||| ||| |||||| Sbjct 14687 ACCTTTGCCTGCAG--GCGTGGCATCTTGTAGCGGTAGAAGATGTCCGTCACGCTGCGGT 14744 Query 34625 TAACGTTCACAGTCCCCAT 34643 |||||||||| ||| |||| Sbjct 14745 TAACGTTCACGGTCGCCAT 14763 >seq4863 Length=1240122 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| | |||||||| ||||| ||| | || ||||||| Sbjct 1063879 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCTTCG 1063938 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||| ||||| || ||| | ||| ||||| Sbjct 1063939 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 1063998 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||||||||||| | | || || | || |||||| Sbjct 1063999 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 1064058 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || ||||| ||||| | | ||||| || || Sbjct 1064059 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGG 1064105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412815733022513