Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq261 136 7e-27 >seq261 Length=229512 Score = 136 bits (150), Expect = 7e-27 Identities = 207/292 (71%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCA-GTCCTCGTCACTCT 35523 ||||||| || |||||| | ||||| ||| | |||||| | || |||| || Sbjct 73777 CTGGCCCATATACTTACCGGCCCGATCTGCGTAGCTTACTTCGCACGGGCTT-TCACCCT 73835 Query 35524 CGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAG 35583 || ||||| | ||| | ||||| || || || | || || |||| || | Sbjct 73836 TAAAGAACAGAAACTGGCAAATGCCTTCATTGGCATAAATGCGTGCAGGCAACGGCGTGG 73895 Query 35584 TGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGA 35643 ||||||||| ||| | || || || |||||||| || ||||| | || || ||||||| Sbjct 73896 TGTTGCTGATCTCGATCGTTACCTGTCCTTCCCATTCTGGTTCTAAAGGGGTGACGTTGA 73955 Query 35644 CGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCG 35703 |||| || || |||||||| |||||| |||||||| || || || || || | |||| Sbjct 73956 CGATAATGCCGCAGCGCGCATAGGTGGATTTACCCAAGCATACTACCAGTACATCACGCG 74015 Query 35704 GAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAAT 35755 | || ||||||||||| | ||| | ||||| | |||||||| |||||||| Sbjct 74016 GGATACGGAAGTATTCAATCGTATGGGCCAGCACAAAGCTGTTGGGCGGAAT 74067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825863724521640