Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_022756.1 Length=40931 Score E Sequences producing significant alignments: (Bits) Value seq4953 152 1e-32 >seq4953 Length=802672 Score = 152 bits (168), Expect = 1e-32 Identities = 224/317 (71%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 29473 ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCGGTTGATCTTCGCTATACG 29532 ||| ||||| |||| | | | || || | ||||| | |||||| | || || || Sbjct 673316 ATGATTAATACAGTAGTTCTTACTGGACGCTTAACACGAGACGTTGATTTGCGATACACC 673257 Query 29533 CAAAGCGGAACAGCGGTTGGTTCATTTACGATTGCTGTTGATCGCCAATTTCGTAGCGCA 29592 |||| || | || |||||| | ||||| | |||||||| || | || | | Sbjct 673256 CAAAATGGCGCGGCAGTTGGTACTTTTACCCTAGCTGTTGACCGTCGTTTCACCAATTCG 673197 Query 29593 AATGGGGAACGAGAAACTGACTTCATCAATTGTGCCATCTGGCGTAAGTCTGCCGAGAAT 29652 ||||| || || ||| |||||||| |||| |||| || ||||| || || || || || Sbjct 673196 AATGGTGATCGGGAAGCTGACTTCGTCAACTGTGTTATTTGGCGAAAATCAGCTGAAAAC 673137 Query 29653 TTTGCCAACTTCACGCACAAGGGTTCACTTGTTGGCATCGAAGGTCATATCCAAACACGT 29712 |||||||||||| ||| ||||||||||||||||| |||||||||| || || || || Sbjct 673136 TTTGCCAACTTCGTGCATAAGGGTTCACTTGTTGGAATCGAAGGTCGGATTCAGACCCGA 673077 Query 29713 ACGTATGATAACGCGCAAGGCCAGAAAGTATTCGTGACTGAGGTCATTGTTGAGAATTTT 29772 | || || ||| ||| ||||| ||| | || || || || |||||||||| ||| Sbjct 673076 AATTACGAGAACAAGCAGGGCCAACGAGTTTATGTTACCGAAGTAGTTGTTGAGAACTTT 673017 Query 29773 GCTTTGCTTGAATCACG 29789 | | |||||| |||| Sbjct 673016 ACCCTCCTTGAACCACG 673000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130849611225306