Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4765 140 2e-28 seq4644 98.7 8e-16 >seq4765 Length=3541379 Score = 140 bits (154), Expect = 2e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| || | || || || || ||||||||||| || | | |||||| | Sbjct 2921412 CGGAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCA 2921471 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||||||| | |||| | |||||||| || ||||| || |||||| Sbjct 2921472 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 2921531 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||||| |||| | |||||| || |||| || |||||||| || Sbjct 2921532 TCCTG-AATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGAT 2921590 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || | ||| || || || |||||||| || Sbjct 2921591 GGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTT 2921629 >seq4644 Length=1132839 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | || ||| ||||||||||| || || || || || || ||||| || || | Sbjct 752535 TCCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGA 752476 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| || || || || ||||| || | ||||| | |||||||| || || Sbjct 752475 GAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGG 752416 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| || | || || ||| | || | ||||| || | || || Sbjct 752415 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCAC 752356 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | || || || || || || | ||| || ||||| ||||||||| Sbjct 752355 CTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385195063729881