Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5094 150 1e-30 seq4998 116 3e-20 seq4837 93.3 3e-13 >seq5094 Length=366253 Score = 150 bits (166), Expect = 1e-30 Identities = 179/236 (76%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAA-AGAGTAACATCATGGGTTCCACCACCCAT 282297 |||||||| | |||||| | | | ||| | || ||||||| || || ||||| | Sbjct 124517 ACTTGGAAGACTCCATCCCCTA-ATTCAAGGACAGAAACATCAAAAGTACCTCCACCTAA 124459 Query 282298 ATCAAAAA-TAAG-TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAA 282355 |||| ||| |||| | ||||| ||||||||| ||||||| | |||||| |||| Sbjct 124458 ATCATAAACTAAGATTTTTTCAT--CTTTGTCTT---TTTTATCTAAACCATATGCAAGT 124404 Query 282356 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 282415 | ||| ||||| ||||||||||||||||| ||||| ||| || |||||| | || ||| Sbjct 124403 GAAGCTGCAGTAGGTTCATTAATAATTCTTTTAACATCAAGTCCGGCAATTTTACCGGCA 124344 Query 282416 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||||| || ||||| | ||| | ||| ||||| || ||||||||||||||||| || Sbjct 124343 TCTTTGGTAGCTTGACGTTGAGCATCATTAAAGTAAGCAGGAACAGTAATAACTGC 124288 Score = 107 bits (118), Expect = 1e-17 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 ||||||| |||||||| | |||||||| ||||||||||| ||| | |||||| | | Sbjct 124420 CTAAACCATATGCAAGTGAAGCTGCAGTAGGTTCATTAATAATTCTTTTAACATCAAGTC 124361 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | ||||||||| | | ||| || ||||| | || || |||||||| || || || | Sbjct 124360 CGGCAATTTTACCGGCATCTTTGGTAGCTTGACGTTGAGCATCATTAAAGTAAGCAGGAA 124301 Query 86234 CAGTAATAACTGCTTTATTAATAG 86257 ||||||||||||||| | ||| || Sbjct 124300 CAGTAATAACTGCTTGACTAACAG 124277 >seq4998 Length=2541160 Score = 116 bits (128), Expect = 3e-20 Identities = 548/866 (63%), Gaps = 6/866 (1%) Strand=Plus/Minus Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 |||| |||| ||||||| ||| || | ||||| | | || || || ||||| || | Sbjct 427667 AATCGGTTCCCTCGAACAGAGAGTCGATCTCAATGCTGGCCTGGGTGGAGGAAGAGAGGG 427608 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 282135 || || ||||| || || || || | || | || | ||| ||| ||| | | Sbjct 427607 TGCGCTTTGCACGCTCGCAGGCAGTGCGCAGACGACGCAGGGCAC--GCTTGTTGGTGGT 427550 Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 || ||| | || | || | |||||| || | || | || || ||||| || || Sbjct 427549 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACGAAATGCGTGACCAGACGGTTGTC 427490 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||||| || || ||||| | |||| || | || | | || | || | || || Sbjct 427489 GAAATCCTCGCCACCCAAATGGGTATCACCGGCGGTGGACTTGACCTCAAAGATGCCGTC 427430 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 || | |||| || | ||||| ||| || ||||||| ||| || || || || || Sbjct 427429 GTCGATGGACAGAATGGACACATCGAAGGTGCCGCCACCCAGATCGAAGATGAGAACGTT 427370 Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 || | || || || ||||| || |||| || ||||| || || || || Sbjct 427369 GCGCTCGCCAACAGCCTTCTTGTCCAGACCGTAGGCAATGGCCGCAGCCGTGGGCTCGTT 427310 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 ||| || | | ||||| ||||| || || |||| ||||| || ||||| || | || Sbjct 427309 AATGATACGAAGCACATTCAGACCGGCGATGGTTCCGGCATCCTTGGTGGCCTGACGCTG 427250 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 || ||||| || || || || || || || || || | || || || || | ||| Sbjct 427249 GGAGTCGTTGAAGTAGGCCGGCACGGTGATGACCGCGTTGGTCACAGTCTTGCCCAGATA 427190 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555 || || || | ||||| || | | | ||| || || || | || || ||| | Sbjct 427189 GGCCTCGGCAGTCTCCTTCATCTTGGTGAGCACCATCGAGGAGATCTCCTCGGG-GAAGA 427131 Query 282556 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 | ||| || | | || | || || | | || || | |||| | | || Sbjct 427130 AGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATTTTGGGCTTGCCATCAACGCTGACAA 427071 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | | || ||||| | ||||| || || || || ||| | || | | |||| Sbjct 427070 CCTCGAAGGGCCAGTGCTTCATGTCAGACTGCACGGCAGAGTCGTCGAACTTGCGGCCAA 427011 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | | || || ||||| || || || | ||| || || | ||| | || | ||||| | Sbjct 427010 TGAGACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATTGCCACCTGGTTCTTGGCGG 426951 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 |||| || |||||| | || || || || || | |||||| ||||| || || ||||||| Sbjct 426950 CATCGCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGTGTGGTACGATTAC 426891 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 | || || || || || || || || || |||| || | || || || || | | Sbjct 426890 CCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACTCCCACGCACGAGTAGG 426831 Query 282855 TTGTTCCTAAATCAATACCAATAGCA 282880 | || || ||||||||||||| |||| Sbjct 426830 TGGTGCCCAAATCAATACCAACAGCA 426805 >seq4837 Length=1611981 Score = 93.3 bits (102), Expect = 3e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 ||||| ||| || ||||||| ||| || | || |||||| | || | | | || Sbjct 528708 ACATCGAAGGTACCGCCACCCAGATCGAACACCAGCACATTCTTCTC---GCCCTCCTTC 528764 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || ||||| || |||| ||| |||||||| ||||| || || || | || |||| Sbjct 528765 TTGTCCAGACCGTAGGCAATAGCCGCAGCAGTCGGTTCGTTGATGATGCGCATCACATGG 528824 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||||||||| || ||||| || || || || | || | |||||| || || || Sbjct 528825 AGACCAGCAATCACACCGGCATCCTTGGTCGCCTGACGCTGGGCATCGTTGAAGTAGGCC 528884 Query 282455 GGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485 || ||||| | ||| |||| || | |||||| Sbjct 528885 GGGACAGTGACAACAGCATGGGTAACCTTCTT 528916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740377998625866