Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq5094 150 1e-30
seq4998 116 3e-20
seq4837 93.3 3e-13
>seq5094
Length=366253
Score = 150 bits (166), Expect = 1e-30
Identities = 179/236 (76%), Gaps = 9/236 (4%)
Strand=Plus/Minus
Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAA-AGAGTAACATCATGGGTTCCACCACCCAT 282297
|||||||| | |||||| | | | ||| | || ||||||| || || ||||| |
Sbjct 124517 ACTTGGAAGACTCCATCCCCTA-ATTCAAGGACAGAAACATCAAAAGTACCTCCACCTAA 124459
Query 282298 ATCAAAAA-TAAG-TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAA 282355
|||| ||| |||| | ||||| ||||||||| ||||||| | |||||| ||||
Sbjct 124458 ATCATAAACTAAGATTTTTTCAT--CTTTGTCTT---TTTTATCTAAACCATATGCAAGT 124404
Query 282356 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 282415
| ||| ||||| ||||||||||||||||| ||||| ||| || |||||| | || |||
Sbjct 124403 GAAGCTGCAGTAGGTTCATTAATAATTCTTTTAACATCAAGTCCGGCAATTTTACCGGCA 124344
Query 282416 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471
||||| || ||||| | ||| | ||| ||||| || ||||||||||||||||| ||
Sbjct 124343 TCTTTGGTAGCTTGACGTTGAGCATCATTAAAGTAAGCAGGAACAGTAATAACTGC 124288
Score = 107 bits (118), Expect = 1e-17
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173
||||||| |||||||| | |||||||| ||||||||||| ||| | |||||| | |
Sbjct 124420 CTAAACCATATGCAAGTGAAGCTGCAGTAGGTTCATTAATAATTCTTTTAACATCAAGTC 124361
Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233
| ||||||||| | | ||| || ||||| | || || |||||||| || || || |
Sbjct 124360 CGGCAATTTTACCGGCATCTTTGGTAGCTTGACGTTGAGCATCATTAAAGTAAGCAGGAA 124301
Query 86234 CAGTAATAACTGCTTTATTAATAG 86257
||||||||||||||| | ||| ||
Sbjct 124300 CAGTAATAACTGCTTGACTAACAG 124277
>seq4998
Length=2541160
Score = 116 bits (128), Expect = 3e-20
Identities = 548/866 (63%), Gaps = 6/866 (1%)
Strand=Plus/Minus
Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077
|||| |||| ||||||| ||| || | ||||| | | || || || ||||| || |
Sbjct 427667 AATCGGTTCCCTCGAACAGAGAGTCGATCTCAATGCTGGCCTGGGTGGAGGAAGAGAGGG 427608
Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 282135
|| || ||||| || || || || | || | || | ||| ||| ||| | |
Sbjct 427607 TGCGCTTTGCACGCTCGCAGGCAGTGCGCAGACGACGCAGGGCAC--GCTTGTTGGTGGT 427550
Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195
|| ||| | || | || | |||||| || | || | || || ||||| || ||
Sbjct 427549 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACGAAATGCGTGACCAGACGGTTGTC 427490
Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255
||||| || || ||||| | |||| || | || | | || | || | || ||
Sbjct 427489 GAAATCCTCGCCACCCAAATGGGTATCACCGGCGGTGGACTTGACCTCAAAGATGCCGTC 427430
Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315
|| | |||| || | ||||| ||| || ||||||| ||| || || || || ||
Sbjct 427429 GTCGATGGACAGAATGGACACATCGAAGGTGCCGCCACCCAGATCGAAGATGAGAACGTT 427370
Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375
|| | || || || ||||| || |||| || ||||| || || || ||
Sbjct 427369 GCGCTCGCCAACAGCCTTCTTGTCCAGACCGTAGGCAATGGCCGCAGCCGTGGGCTCGTT 427310
Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435
||| || | | ||||| ||||| || || |||| ||||| || ||||| || | ||
Sbjct 427309 AATGATACGAAGCACATTCAGACCGGCGATGGTTCCGGCATCCTTGGTGGCCTGACGCTG 427250
Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495
|| ||||| || || || || || || || || || | || || || || | |||
Sbjct 427249 GGAGTCGTTGAAGTAGGCCGGCACGGTGATGACCGCGTTGGTCACAGTCTTGCCCAGATA 427190
Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555
|| || || | ||||| || | | | ||| || || || | || || ||| |
Sbjct 427189 GGCCTCGGCAGTCTCCTTCATCTTGGTGAGCACCATCGAGGAGATCTCCTCGGG-GAAGA 427131
Query 282556 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614
| ||| || | | || | || || | | || || | |||| | | ||
Sbjct 427130 AGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATTTTGGGCTTGCCATCAACGCTGACAA 427071
Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674
| | || ||||| | ||||| || || || || ||| | || | | ||||
Sbjct 427070 CCTCGAAGGGCCAGTGCTTCATGTCAGACTGCACGGCAGAGTCGTCGAACTTGCGGCCAA 427011
Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734
| | || || ||||| || || || | ||| || || | ||| | || | ||||| |
Sbjct 427010 TGAGACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATTGCCACCTGGTTCTTGGCGG 426951
Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794
|||| || |||||| | || || || || || | |||||| ||||| || || |||||||
Sbjct 426950 CATCGCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGTGTGGTACGATTAC 426891
Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854
| || || || || || || || || || |||| || | || || || || | |
Sbjct 426890 CCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACTCCCACGCACGAGTAGG 426831
Query 282855 TTGTTCCTAAATCAATACCAATAGCA 282880
| || || ||||||||||||| ||||
Sbjct 426830 TGGTGCCCAAATCAATACCAACAGCA 426805
>seq4837
Length=1611981
Score = 93.3 bits (102), Expect = 3e-13
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334
||||| ||| || ||||||| ||| || | || |||||| | || | | | ||
Sbjct 528708 ACATCGAAGGTACCGCCACCCAGATCGAACACCAGCACATTCTTCTC---GCCCTCCTTC 528764
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
|| || ||||| || |||| ||| |||||||| ||||| || || || | || ||||
Sbjct 528765 TTGTCCAGACCGTAGGCAATAGCCGCAGCAGTCGGTTCGTTGATGATGCGCATCACATGG 528824
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
||||||||||| || ||||| || || || || | || | |||||| || || ||
Sbjct 528825 AGACCAGCAATCACACCGGCATCCTTGGTCGCCTGACGCTGGGCATCGTTGAAGTAGGCC 528884
Query 282455 GGAACAGTAATAACGGCATCTGTTA-CTTCTT 282485
|| ||||| | ||| |||| || | ||||||
Sbjct 528885 GGGACAGTGACAACAGCATGGGTAACCTTCTT 528916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740377998625866
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |