Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq4765 161 1e-34 seq4810 114 1e-20 >seq4765 Length=3541379 Score = 161 bits (178), Expect = 1e-34 Identities = 694/1081 (64%), Gaps = 32/1081 (3%) Strand=Plus/Minus Query 150370 GACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTT 150429 |||||| || || | |||||| ||||| ||||| | || ||||| |||||||| Sbjct 3010795 GACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTTTT 3010736 Query 150430 GAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTT-G 150488 ||||| |||||| ||| | ||| | || | || || | || ||| ||| | | Sbjct 3010735 AAGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTT-GCCATAGTTGGGCTCAG 3010677 Query 150489 CCATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTT 150548 ||| | | ||||||||||||||| ||||||||||| || || | ||||| ||||||| Sbjct 3010676 CCACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCATTT 3010617 Query 150549 CAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTTTA 150608 ||| | |||| || | ||||||||| || ||| ||||||| | | Sbjct 3010616 TAATGGTGGATTTCACAGAGATCTCCCAAA---CC------GTCTTGTACAGATCGCGAA 3010566 Query 150609 GATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTCTGTTTGCCATGAT-TGTTTTT 150667 ||| | |||||| ||||| || || || | | | | ||||| || || | Sbjct 3010565 CATTCTGGGGAATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCT 3010506 Query 150668 CGCATACTATTTGTATAGAGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTGACA 150727 ||| || | | | | | ||||||| | | || ||||||| Sbjct 3010505 -TCATGTCATCATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACC 3010447 Query 150728 ACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACGGTTCAAAT 150787 || || |||||||| || | ||| || | | | | ||| || |||| || || Sbjct 3010446 ACCTGGAATTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAG 3010387 Query 150788 GACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAAT 150847 || ||||||||| | ||| || || || | ||||| |||||| ||||| |||| Sbjct 3010386 GATTCGTTGTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGA 3010327 Query 150848 GAATTACGTAATCCGTATTT-TTGTATATTTATT--TTCAACTGTGACCAGTCCCATAAC 150904 || || | | |||| ||| ||| || ||| |||| || || ||||||||| | Sbjct 3010326 GAGTTTCTAACGCCGTGTTTCTTG---ATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGG 3010270 Query 150905 GAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACCG 150964 || |||||| | | ||||| ||||| || | ||||| | |||| | ||| || Sbjct 3010269 TTCGTGGGTACCTTGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCC 3010210 Query 150965 GCAAACGTGCTATAAGGCTCACTAACAGATGCCAGTTCGTAACTGGCCTCGAGCGCAGCA 151024 | | || ||| || | || |||||||| ||||||| || || || || Sbjct 3010209 TCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCA 3010150 Query 151025 TGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTACGGT 151084 | ||| | |||||| || |||| ||||| ||| | || | ||||| |||| || Sbjct 3010149 TAATATATCGTTTCAAAGATCTGTTGATTCAGGAGACCCGCCTCCTCGCTTTCGTAGGGG 3010090 Query 151085 ATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGG 151144 | | || || || || |||||||| | || |||| ||| ||||| ||||| ||||| Sbjct 3010089 AATCTCATCAGAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGC 3010030 Query 151145 CGCATATTAGAtttttttGCAGTTTCAATAGGG--TAGAAATTGCGATCAATAATTTTAT 151202 | |||||| ||||| | || | | |||| || | ||| |||||||| || | Sbjct 3010029 CTCATATTCGATTTCCTGGC--CTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGT 3009972 Query 151203 TCAAACTATTCACTACA-TGTT--TGACCACAGTGTGCAATAGTTGAAAATCAAAAG--- 151256 ||| | | || | ||| | || ||||| | | || | || |||||| | | Sbjct 3009971 TCAGATTCTTGGCCACAGTCTTGGTGACCTCCTTCAGC--TTCTT-AAAATCGTACGTCT 3009915 Query 151257 TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGT 151316 | || | | | | | |||| || || ||||| || || || ||||| | |||| Sbjct 3009914 TTTCGGGCGTCACAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGT 3009855 Query 151317 CGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAAT 151376 |||||| | | || | || ||||| | |||| ||||||||| || || || || Sbjct 3009854 CGGGCGAGGAGTACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACAT 3009795 Query 151377 TACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTT 151436 | |||||||| || | |||||| || |||||| | | ||||||||| |||| || | Sbjct 3009794 TCTGCTGATTGCTCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCT 3009735 Query 151437 C 151437 | Sbjct 3009734 C 3009734 Score = 102 bits (112), Expect = 8e-17 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| || || || |||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 2921472 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 2921531 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||| || ||| | | ||| | ||||| | ||||| || |||| ||| | Sbjct 2921532 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATG 2921591 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTT 137421 |||||||| || | || || ||||| || ||||| ||| |||| Sbjct 2921592 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT--CTTGTGTT 2921634 >seq4810 Length=1195048 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||||| ||| || |||| || || || || || |||||||||||| Sbjct 316531 GCCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 316472 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| || || || || || ||| |||||||||| ||||| || || || Sbjct 316471 CAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316412 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| || || || | | || | ||||| | ||| || || Sbjct 316411 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGAC 316352 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||||||||| || || ||||| |||||||| Sbjct 316351 CTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 316304 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || ||||| | || || || || || |||||||||||| Sbjct 316987 GCCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGA 316928 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| || || || || || ||| |||||||||| ||||| || || || Sbjct 316927 CAAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316868 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| || || || | | || | ||||| | ||| || || Sbjct 316867 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGAC 316808 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||| ||||| || || ||||| || ||||| Sbjct 316807 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||||| ||| || |||| || || || || || |||||||| || Sbjct 316759 GCCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 316700 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || || || || || || ||| |||||||||| ||||| || || || Sbjct 316699 GAGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 316640 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| || || || | | || | || || | ||| || || Sbjct 316639 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGAC 316580 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||||||||| || || ||||| || ||||| Sbjct 316579 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488512604941200