Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_023719.1
Length=497513
Score E
Sequences producing significant alignments: (Bits) Value
seq4953 295 2e-74
>seq4953
Length=802672
Score = 295 bits (326), Expect = 2e-74
Identities = 656/977 (67%), Gaps = 16/977 (2%)
Strand=Plus/Minus
Query 69092 ACGTATTTGATTATGAAGATATTCAATTGGTACCAGCAAAGTGTATAGTTGAGAGCCGTT 69151
|||| |||||||| |||||||||||| || | || |||||| | ||| | ||
Sbjct 674794 ACGTGTTTGATTACGAAGATATTCAACTGATTCCGAATAAGTGTGTGGTTAACTCTCGAA 674735
Query 69152 CCGAGTGTGATACATCTATT-AGTTTAGGGAATCGAAAATTTAAATTACCAGTAGTTCCA 69210
||| ||||| || || || ||||| ||| || || || || | || || || |||
Sbjct 674734 GCGAATGTGACACTTCGGTTGAGTTTGGGGGC-CGTAAGTTCAAGATCCCGGTCGTACCA 674676
Query 69211 TCTAATATGCAAACGATTATTGATGAGAAAATAGCTGCTTATTTAGCNNNNNNNGGCTAT 69270
|||| ||||||||| | ||| | | | |||| | | | || || ||
Sbjct 674675 GCTAACATGCAAACGGTGATTAACGCTGACCTAGCCGAGAGTCTCGCTAAAAATGGTTAC 674616
Query 69271 TTCTATGTAATGCATAGATTTGAACCCGAGACTAGACTTGATTTTATTAAAGATATGCAA 69330
||||| || ||||| | ||| |||| || | | ||||||||| | ||| | |||||
Sbjct 674615 TTCTACGTCATGCACCGTTTTCAACCAGAAAAACGCCTTGATTTTGTGAAAAAAATGCAT 674556
Query 69331 -AC--TCGCAACTTATATGCTTCTATTAGTGTTGGTGTAAAAGAAGAAGAGTATCAATTT 69387
|| | | ||| ||| || || ||| | || || || | || || | ||
Sbjct 674555 GACGATGGGG---TATTTGCCTCCATCAGTATCGGGGTTAAGCCCAACGAATACGATTTC 674499
Query 69388 ATTAATCAATTAGCTGATGAAAAACTTGTTCCAGAATATATCACTATTGATATAGCTCAC 69447
||||| || | | | | | | |||||||||| ||||| ||||| || || |||
Sbjct 674498 ATTAAGGAACTGGTCCAAGCCGACCAAATTCCAGAATACATCACGATTGACATTGCCCAC 674439
Query 69448 GGACATTCTAATGCTGTTATTAAAATGATTCAA--CATATAAAGAA--GATGTTACCAAA 69503
|| | || | | || || || |||||| | | | ||| ||| |||| || ||
Sbjct 674438 GGTTACTCGGACTCGGTCATCAACATGATTAAGTTCGT-TAAGGAACGGATG---CCCAA 674383
Query 69504 TAGTTTTGTTATTGCTGGTAATGTTGGTACACCTGAAGCTGTTCGTGAACTTGAAAATGC 69563
| |||| | |||||||| || ||||| || || ||||| ||||| | ||||||||||||
Sbjct 674382 CACTTTTCTGATTGCTGGAAACGTTGGAACCCCAGAAGCCGTTCGGGCACTTGAAAATGC 674323
Query 69564 AGGCGCAGATGCTACAAAAGTTGGTATTGGCCCAGGTAAAGTATGTATTACTAAAATCAA 69623
|| || || || || || || || ||||| || || || | || || ||||| || ||
Sbjct 674322 GGGTGCGGACGCCACCAAGGTCGGAATTGGACCCGGAAAGGCCTGCATCACTAAGATTAA 674263
Query 69624 AACTGGTTTTGGTACTGGCGGCTGGCAGTTAGCTGCATTGCGTTGGTGTTCAAAAGTAGC 69683
|| |||||||| || || || ||||| ||||||| | || | ||| | |||| |||
Sbjct 674262 GACCGGTTTTGGAACCGGGGGATGGCAACTAGCTGCCATTCGCTATTGTGCGAAAGGAGC 674203
Query 69684 TACTAAACCAATAATTGCTGATGGTGGTATTCGTACTAACGGTGATATTGCTAAATCTGT 69743
| ||||| || || ||||| || || ||||| || | ||||| || || ||||| |
Sbjct 674202 CAGAAAACCCATCATCGCTGACGGAGGGATTCGGACCGATGGTGACATCGCGAAATCGAT 674143
Query 69744 ACGTTTTGGCGCTTCAATGGTTATGATTGGTTCGCTATTTGCGGGTCACGAGGAATCACC 69803
|| ||||| ||| ||||| ||||| || ||| | |||||||| || | || || ||
Sbjct 674142 TCGCTTTGGTGCTACAATGTGCATGATCGGATCGATGTTTGCGGGCCATCAAGAGTCTCC 674083
Query 69804 AGGTGAGACGATAGaaaaaaaTGGTAAATTATATAAAGAGTATTTTGGATCCGCTTCTGA 69863
||| | | |||||||| |||| || ||| ||||| || ||||| || || || |
Sbjct 674082 GGGTCAAAAAGTAGAAAAAGATGGGAAGGAATACAAAGAATACTTTGGTTCTGCATCCCA 674023
Query 69864 ATATCAAAAGGGTGAAAAGAAGAACGTTGAAGGAAAGAAGATACATGTAGAATGTAAAGG 69923
|| ||||||||||| | || ||||| || ||||||||| | || | || ||
Sbjct 674022 ATTTCAAAAGGGTGCCTACAAAAACGTGGAGGGAAAGAAGTTGTTAGTTCCTTTCAAGGG 673963
Query 69924 GAGTTTGAAAGATACGTTGATTGAAATGGAACAAGATCTTCAATCTTCAATTTCTTATGC 69983
|| | | || || || ||| ||| || | || || || || ||||| || || ||
Sbjct 673962 CAGCATCTATGACACTCTGCGTGAGATGCAAGAGGACCTGCAGTCATCAATCTCATACGC 673903
Query 69984 TGGTGGTAAAGATTTATTAGCAATTAGAAATGTAGATTATGTCGTTGTTAAGAACTCCAT 70043
|||||| |||||| | || || | || || || || || || ||||| || || ||
Sbjct 673902 TGGTGGAAAAGATATCGACGCCATCCGGAAGGTTGACTACGTGGTCGTTAAAAATTCAAT 673843
Query 70044 TTTCAATGGAGATAAAA 70060
|| ||||| ||| |||
Sbjct 673842 TTATAATGGTGATTAAA 673826
Score = 105 bits (116), Expect = 2e-17
Identities = 247/370 (67%), Gaps = 2/370 (1%)
Strand=Plus/Plus
Query 54156 CAACCAGCTACTCCAACTTTCCTAAATGCTGGTA-GAAGCAGACGCGGAGAAATGGTTTC 54214
||||| || || || ||||| | || ||||| | ||| | | || || || || ||||
Sbjct 185276 CAACCTGCCACCCCTACTTTTTTGAACGCTGGAAAGAAAC-GTCGGGGTGAGTTGATTTC 185334
Query 54215 TTGTTTCTTATTAGAAATGGATGATAGCTTGAATTCAATTGGTTTCAATATCAATACTGC 54274
||||||||| | | | |||| | ||||| | || ||| | || ||| | ||
Sbjct 185335 ATGTTTCTTACTTCAGACCACCGATAACATGAATACGATCGGTAGAACCATTAATTCAGC 185394
Query 54275 AATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAACTTAGAGGAAG 54334
| |||||||| |||||||| || || |||| | || |||||||| || ||||
Sbjct 185395 TCTTCAATTATCCAAAATTGGTGGAGGAGTTGGAATTAATCTTTCTAACCTAAGAGCTGC 185454
Query 54335 AAAAGAGCAAATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCAGTTATGAAACT 54394
|| | |||||| ||| | | || || ||| || | ||||| ||||| |
Sbjct 185455 TGGTGATCCCATTAAACACATTCAAGGAGCAGCCAGTGGTGTTCTTCCAGTAATGAAGTT 185514
Query 54395 TTTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCGCTGGAGCTGT 54454
|||||||||| ||| | ||| | || || || ||||||||||| || ||||| | |||
Sbjct 185515 ACTAGAAGATAGTTTCACCTATTCCAACCAACTAGGCCAAAGAAACGGTGCTGGGGTTGT 185574
Query 54455 TTACTTAAACATCTTCCACTGGGATATTATTGAATTCTTAGATACTAAAAAGATCAATGC 54514
||| | | | ||||| || || ||| ||||||| | ||||||| || ||
Sbjct 185575 TTATCTTAGTGTTTTCCATCCTGACATCATTCAATTCTTGGGAGTTAAAAAGGAAAACGC 185634
Query 54515 TGATGAAAAA 54524
|| ||||||
Sbjct 185635 CGACGAAAAA 185644
Score = 84.2 bits (92), Expect = 7e-11
Identities = 114/158 (72%), Gaps = 6/158 (4%)
Strand=Plus/Minus
Query 206944 AATAAAGGTAATGTGAAAGCTCGTATGAGAATGATAGCTCAATATGCTATTGGCGGAGCG 207003
||||| ||||| | || ||||| | |||||||| ||||| | | | |||| ||| ||
Sbjct 210545 AATAAGGGTAACATTAAGGCTCGGACTAGAATGATTGCTCAGTTTACGATTGCCGGTGCT 210486
Query 207004 AAAAATCTATTAGTAATTGGAACAGATCATGCTGCAGAAGCTATAACTGGTTTCTATACA 207063
|| | | | || ||||||| ||||||||||| || || | ||||| || |||||
Sbjct 210485 AATCAAGGAATTGTCCTTGGAACTGATCATGCTGCCGAGGCGGTGACTGGATTTTATACC 210426
Query 207064 AAATTTGGAGACAATGGAG---TAGATATTTTACCTAT 207098
|||||||| | |||||| ||||||| | |||||
Sbjct 210425 AAATTTGGGG---ATGGAGCTTCAGATATTGTTCCTAT 210391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1591805542354368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |