Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq4764 95.1 2e-14 >seq4764 Length=1750656 Score = 95.1 bits (104), Expect = 2e-14 Identities = 179/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 183022 CTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGA 183081 || ||||| || | ||| | ||| || | | || || ||||||||| |||| || || Sbjct 341581 CTGTGGAACGCGGCGCAACTGCAGCTGGTTCGCGAGGGCAAAATGCATGGTTTCTTGCGC 341640 Query 183082 ATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGC-TTTGAGTTA 183140 ||||||||||| || ||||| || || |||| || ||||| | || | ||| || Sbjct 341641 ATGTACTGGGCCAAGAAGATCCTCGAGTGGAGCCCCACGCCGGAGCAGGCGCTCGAG-TA 341699 Query 183141 TAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGG 183200 ||| ||||| | |||||| || ||||| ||||| ||||| || || || Sbjct 341700 CGCCATCCTGCTGAACGACAAGTACAGCCTGGACGGGCGCGATCCCAACGGCTATGTGGG 341759 Query 183201 TTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGG 183260 ||| |||||||| || |||| | ||||||| | ||||| || | | || || || Sbjct 341760 TTGCATGTGGTCCATCGGCGGCGTCCACGATATGGGCTGGAAGGAGCGGGCCATCTTCGG 341819 Query 183261 AAAGATAAGATATATGAATTA 183281 ||||| | || |||||||| Sbjct 341820 TAAGATTCGGTACATGAATTA 341840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903353144537760