Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq4644 127 1e-24
seq4810 107 1e-18
seq4863 95.1 8e-15
seq4765 89.7 3e-13
>seq4644
Length=1132839
Score = 127 bits (140), Expect = 1e-24
Identities = 160/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| || ||||| ||| || || |||||||| |||||||| |||||| |
Sbjct 752751 ACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCC 752692
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
||| |||| || || ||||| || |||||||||||||||||| | || | || || ||
Sbjct 752691 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTT 752632
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
||| ||||| ||| |||| || | ||||||| || ||||| || | ||||
Sbjct 752631 GTCTTGGATTTTGGCCTTC-ACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGA 752573
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || || || | || || ||||||||||||||
Sbjct 752572 TGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 752536
Score = 125 bits (138), Expect = 5e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || | || ||| | |||||| || || ||| ||| || || |||||||| ||||||
Sbjct 751849 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 751790
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| |||| |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 751789 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 751730
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || ||| |||| || | |||||| | ||| ||
Sbjct 751729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCCGAAGGTTCAAC 751671
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || || ||||| ||||||||||||||
Sbjct 751670 CTCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 751623
Score = 125 bits (138), Expect = 5e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || | || ||| | ||||||||| || || ||| || || |||||||| ||||||
Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| |||| |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || ||| |||| || | ||||||| || |||||
Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCGGATGGCTCCAC 752356
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || ||||||||||||||
Sbjct 752355 CTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 752308
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || | || ||| | |||||| || || ||| ||| || || |||||||| ||||||
Sbjct 752306 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 752247
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| |||| |||| || || || || || |||||||||||||||||| | ||
Sbjct 752246 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 752187
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || ||| |||| || | ||||||| || |||||
Sbjct 752186 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCGGATGGCTCCAC 752128
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || || |||||||||||
Sbjct 752127 CTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCAT 752080
Score = 100 bits (110), Expect = 2e-16
Identities = 162/229 (71%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || | || ||| | |||||| || ||||| ||| || || |||||||| || |||
Sbjct 752078 CCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAG 752019
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || || ||||| ||||| | ||||||||||||| | ||
Sbjct 752018 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGG 751959
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || ||| |||| || | ||||||| || |||||
Sbjct 751958 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCGGATGGCTCCAC 751900
Query 33702 GTCAACCGTGATCGT-TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || ||| | || | || || ||||||||||||||
Sbjct 751899 TTCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCAT 751851
>seq4810
Length=1195048
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || | || ||| | |||||||| | |||| ||| || || ||||||||||||||
Sbjct 316986 CCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGAC 316927
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| |||||| |||| |||| || ||||||||||| |||| ||||||||| ||| | ||
Sbjct 316926 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316867
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || | | || | || | ||||||| | || ||
Sbjct 316866 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGAC 316808
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || || || || || |||||||||||
Sbjct 316807 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760
Score = 102 bits (112), Expect = 5e-17
Identities = 169/239 (71%), Gaps = 4/239 (2%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || | || ||| | ||||| || || ||| ||| || || ||||||||||||||
Sbjct 316530 CCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 316471
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| |||| |||| || ||||||||||| |||| ||||||||| ||| | ||
Sbjct 316470 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316411
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || | | || | || | |||||| | || ||
Sbjct 316410 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGAC 316352
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG-TGTG 33759
|||| ||||| || || || || || || || || ||||| ||||| ||||| ||||
Sbjct 316351 CTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT-GTTGGCTGTG 316294
>seq4863
Length=1240122
Score = 95.1 bits (104), Expect = 8e-15
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | |||||| || || || ||| || || |||||||| |||||
Sbjct 1064105 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1064046
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || || |||||||| |||| ||||||||||||| | ||
Sbjct 1064045 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 1063986
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || | | |||| || | |||||| | |||||
Sbjct 1063985 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCAC 1063927
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
|| | ||||| || || || || | ||||| || ||||||||||| ||
Sbjct 1063926 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATGGT 1063876
>seq4765
Length=3541379
Score = 89.7 bits (98), Expect = 3e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
|||||| || | || ||| || || ||||| || || ||||| ||||| | || ||
Sbjct 2921417 CACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 2921476
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
|| || || || ||||| |||| ||||||||||||| | || | |||||||||||
Sbjct 2921477 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 2921536
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
||| || | || |||| || | ||||| | ||| || |||| ||||| || |
Sbjct 2921537 AATCTT-GGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCT 2921595
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | || || || |||||||||||
Sbjct 2921596 TGCCCGTGAGGGTCTTCACGAAGATCTGCAT 2921626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328683404742720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |