Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4644 127 1e-24 seq4810 107 1e-18 seq4863 95.1 8e-15 seq4765 89.7 3e-13 >seq4644 Length=1132839 Score = 127 bits (140), Expect = 1e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || ||||| ||| || || |||||||| |||||||| |||||| | Sbjct 752751 ACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCC 752692 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || || ||||| || |||||||||||||||||| | || | || || || Sbjct 752691 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTT 752632 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||||| ||| |||| || | ||||||| || ||||| || | |||| Sbjct 752631 GTCTTGGATTTTGGCCTTC-ACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGA 752573 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | || || |||||||||||||| Sbjct 752572 TGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 752536 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | |||||| || || ||| ||| || || |||||||| |||||| Sbjct 751849 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 751790 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 751789 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 751730 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| |||| || | |||||| | ||| || Sbjct 751729 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCCGAAGGTTCAAC 751671 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || ||||| |||||||||||||| Sbjct 751670 CTCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 751623 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||||||| || || ||| || || |||||||| |||||| Sbjct 752534 CCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 752475 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 752474 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 752415 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| |||| || | ||||||| || ||||| Sbjct 752414 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCGGATGGCTCCAC 752356 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 752355 CTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 752308 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | |||||| || || ||| ||| || || |||||||| |||||| Sbjct 752306 CCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 752247 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||| || || || || || |||||||||||||||||| | || Sbjct 752246 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGG 752187 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| |||| || | ||||||| || ||||| Sbjct 752186 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCGGATGGCTCCAC 752128 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 752127 CTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCAT 752080 Score = 100 bits (110), Expect = 2e-16 Identities = 162/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | |||||| || ||||| ||| || || |||||||| || ||| Sbjct 752078 CCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAG 752019 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || ||||| ||||| | ||||||||||||| | || Sbjct 752018 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGG 751959 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| |||| || | ||||||| || ||||| Sbjct 751958 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCGGATGGCTCCAC 751900 Query 33702 GTCAACCGTGATCGT-TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||| | || | || || |||||||||||||| Sbjct 751899 TTCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCAT 751851 >seq4810 Length=1195048 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | |||||||| | |||| ||| || || |||||||||||||| Sbjct 316986 CCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGAC 316927 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| |||| |||| || ||||||||||| |||| ||||||||| ||| | || Sbjct 316926 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316867 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | || | ||||||| | || || Sbjct 316866 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGAC 316808 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || || || || || ||||||||||| Sbjct 316807 CTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 Score = 102 bits (112), Expect = 5e-17 Identities = 169/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||| || || ||| ||| || || |||||||||||||| Sbjct 316530 CCTCCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 316471 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||| || ||||||||||| |||| ||||||||| ||| | || Sbjct 316470 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316411 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | || | |||||| | || || Sbjct 316410 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATTGTGTCGGAGGGCTCGAC 316352 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG-TGTG 33759 |||| ||||| || || || || || || || || ||||| ||||| ||||| |||| Sbjct 316351 CTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT-GTTGGCTGTG 316294 >seq4863 Length=1240122 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | |||||| || || || ||| || || |||||||| ||||| Sbjct 1064105 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1064046 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| |||| ||||||||||||| | || Sbjct 1064045 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 1063986 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| || | |||||| | ||||| Sbjct 1063985 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCAC 1063927 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || || || | ||||| || ||||||||||| || Sbjct 1063926 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATGGT 1063876 >seq4765 Length=3541379 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || | || ||| || || ||||| || || ||||| ||||| | || || Sbjct 2921417 CACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 2921476 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || ||||| |||| ||||||||||||| | || | ||||||||||| Sbjct 2921477 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 2921536 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| || | || |||| || | ||||| | ||| || |||| ||||| || | Sbjct 2921537 AATCTT-GGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCT 2921595 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 2921596 TGCCCGTGAGGGTCTTCACGAAGATCTGCAT 2921626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328683404742720