Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq4810 89.7 1e-12
seq4644 87.8 4e-12
seq4765 84.2 5e-11
>seq4810
Length=1195048
Score = 89.7 bits (98), Expect = 1e-12
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||| | || || || || |||||| |||| || |||
Sbjct 316328 ACCGGCAAGACTATCACCCTTGAGGTCGAGCCCTCCGACACAATCGAGAACGTCAAGGCC 316387
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || || || ||| || ||| || | || ||||| |||||||||
Sbjct 316388 AAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTGATCTTTGCCGGAAAG 316447
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||| || ||| | || || ||||||||||| ||||||| ||||| || ||||||
Sbjct 316448 CAGCTGGAGGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTTCAC 316507
Query 206374 CTTGTTTTGAGACTTCG 206390
| ||| || | || ||
Sbjct 316508 TTGGTTCTGCGTCTGCG 316524
>seq4644
Length=1132839
Score = 87.8 bits (96), Expect = 4e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || || || ||||| || |||||| |||||||||| || |||
Sbjct 752539 CAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACTCTGGAAGTGGAGCCATCCGAC 752598
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| || || ||||| || || ||||| || || ||
Sbjct 752599 ACCATTGAGAATGTGAAGGCCAAAATCCAAGACAAGGAGGGAATACCCCCAGATCAGCAG 752658
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||||||||| |||||| |||| || ||| | || | |||| |||||| ||
Sbjct 752659 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACAACATC 752718
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
||||| ||||| ||||| |||
Sbjct 752719 CAGAAGGAGTCAACTCTCCAC 752739
Score = 84.2 bits (92), Expect = 5e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| | || ||||| || ||||| ||||| || ||| ||| |||
Sbjct 751626 CAGATCTTTGTGAAAACCTTGACTGGAAAGACCATCACCTTGGAGGTTGAACCTTCGGAC 751685
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| ||||| || || || || ||||| || || ||
Sbjct 751686 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 751745
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||||||||| |||||| |||| || ||| | || | |||| |||||| ||
Sbjct 751746 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACAACATC 751805
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
||||| ||||| || || |||
Sbjct 751806 CAGAAGGAGTCCACCCTCCAC 751826
>seq4765
Length=3541379
Score = 84.2 bits (92), Expect = 5e-11
Identities = 130/183 (71%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || || || |||||| | || || ||| || ||||| |||||
Sbjct 2921611 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGACACTATCGAAAAT 2921552
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || |||||| || |||||||||||| || || || | || |||||
Sbjct 2921551 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 2921493
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|| || |||||| |||||||||| | || | | || || ||| | ||||| |||||
Sbjct 2921492 TGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAGTC 2921433
Query 206364 TAC 206366
|||
Sbjct 2921432 TAC 2921430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181742954571861
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |