Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4810 89.7 1e-12 seq4644 87.8 4e-12 seq4765 84.2 5e-11 >seq4810 Length=1195048 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| | || || || || |||||| |||| || ||| Sbjct 316328 ACCGGCAAGACTATCACCCTTGAGGTCGAGCCCTCCGACACAATCGAGAACGTCAAGGCC 316387 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || ||| || ||| || | || ||||| ||||||||| Sbjct 316388 AAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTGATCTTTGCCGGAAAG 316447 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || ||| | || || ||||||||||| ||||||| ||||| || |||||| Sbjct 316448 CAGCTGGAGGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCCACCCTTCAC 316507 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| || | || || Sbjct 316508 TTGGTTCTGCGTCTGCG 316524 >seq4644 Length=1132839 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || ||||| || |||||| |||||||||| || ||| Sbjct 752539 CAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACTCTGGAAGTGGAGCCATCCGAC 752598 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| || || ||||| || || || Sbjct 752599 ACCATTGAGAATGTGAAGGCCAAAATCCAAGACAAGGAGGGAATACCCCCAGATCAGCAG 752658 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| || ||| | || | |||| |||||| || Sbjct 752659 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACAACATC 752718 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||| ||| Sbjct 752719 CAGAAGGAGTCAACTCTCCAC 752739 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || ||||| || ||||| ||||| || ||| ||| ||| Sbjct 751626 CAGATCTTTGTGAAAACCTTGACTGGAAAGACCATCACCTTGGAGGTTGAACCTTCGGAC 751685 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || ||||| || || || Sbjct 751686 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 751745 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| || ||| | || | |||| |||||| || Sbjct 751746 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTCTCCGACTACAACATC 751805 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || || ||| Sbjct 751806 CAGAAGGAGTCCACCCTCCAC 751826 >seq4765 Length=3541379 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || ||| || ||||| ||||| Sbjct 2921611 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGACACTATCGAAAAT 2921552 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 2921551 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 2921493 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || |||||| |||||||||| | || | | || || ||| | ||||| ||||| Sbjct 2921492 TGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAGTC 2921433 Query 206364 TAC 206366 ||| Sbjct 2921432 TAC 2921430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181742954571861