Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 361 5e-95
seq4978 91.5 1e-13
seq4863 91.5 1e-13
seq4644 89.7 5e-13
seq4810 86.0 6e-12
>seq4765
Length=3541379
Score = 361 bits (400), Expect = 5e-95
Identities = 1204/1851 (65%), Gaps = 48/1851 (3%)
Strand=Plus/Minus
Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631
|| || || || ||||| | |||||||| || ||||| |||||| |||||||| |
Sbjct 3010773 GCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTTTTAAGGCCAGCCTTCCACGAGTAA 3010714
Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691
||| || || |||| || | || | ||||| ||||| || || ||||||||
Sbjct 3010713 AAGTGTATGGATGTCAGCTTGCCATAGTTGGGCTCAGCCACATGAATGTTGAACGATTGA 3010654
Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTCATT 146751
|| ||||| || || || ||| || || ||||| | ||| || ||| ||
Sbjct 3010653 CTCTGATCGATAAACGCACCGCGATCTGCGGCCATTTTAATGGTGGATTTCACAGAGATC 3010594
Query 146752 TCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATA 146811
|||||| | || |||||||| | ||| | | ||||| | || || || || |||
Sbjct 3010593 TCCCAAACCGTCTTGTACAGATCGCGAACATTCTGGGGAATGGCCTCGATATTCTGGATA 3010534
Query 146812 GAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAAAGGTTTAGTTTAAT 146870
||||| | | || || || ||| | || || | | || || | | |
Sbjct 3010533 GAGCCACGGCTGGAAATGATC-TGGTTCTTCATGTCATCATCCCACAAGTCCAGCTCAGT 3010475
Query 146871 GAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAG 146930
|| || | || | || |||||||| || || ||||| | || || || |
Sbjct 3010474 TAGATCCCGCAATAGGTGATGGTTGACCACCTGGAATTCGCCGGAGAGAACGCGGCGTGT 3010415
Query 146931 ATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGT 146990
||| | ||| | ||| | ||||| || || || || ||||| | ||| ||||| ||||
Sbjct 3010414 ATAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGA 3010355
Query 146991 TGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTC 147050
||| || |||||| ||||| | || || |||| | |||| ||| ||
Sbjct 3010354 TGCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTC 3010295
Query 147051 CTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAG 147110
||||| || ||||||||| | || ||| | || ||||||||||||||||||
Sbjct 3010294 CTTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGTACCTTGTCCCACATGTCGTACTGGAG 3010235
Query 147111 CACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAA 147170
| ||| || |||| ||||| || | || || || ||| ||| ||||
Sbjct 3010234 GATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAG 3010175
Query 147171 TTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGAC 147230
|||||| || || || || |||||||| ||||| ||||| ||| |||| || ||||
Sbjct 3010174 TTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGATCTGTTGATTCAGGAG 3010115
Query 147231 GGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTG 147290
||| || ||||| ||||| || | | || || | ||||||||||| | |||||
Sbjct 3010114 ACCCGCCTCCTCGCTTTCGTAGGGGAATCTCATCAGAATCAAGGCATCGGCGAGTCCCTG 3010055
Query 147291 GATACCGACGCCGATAGGTCGATGCTT----TTCG--TTGCTGCGCTTCGCGCTCGCTAT 147344
| || | ||| || || |||||| | |||| || ||| || || || |
Sbjct 3010054 AACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTCCG-----GC-AG 3010001
Query 147345 GGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGT 147404
|||||| | |||| |||||||||||||| || || | ||| || || |
Sbjct 3010000 GGGATAATAGTTGATGTCAATAATCTTGTTCAGATTCTTGGCCACAGTCTTGGTGACCTC 3009941
Query 147405 TTTGAGTTTCTCGAAATCATAAGTCCCGTCTT-CGACACGTACGCATTGGTTCACGGCGA 147463
|| || |||| ||||| || ||| || || ||| || || ||| | ||||
Sbjct 3009940 CTTCAGCTTCTTAAAATCGTACGTCTTTTCGGGCGTCACAAAC--AT--GTTGAGAGCGA 3009885
Query 147464 TAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGC 147523
| |||||||| ||||||||||| |||| |||| | ||||| |||||||| | ||
Sbjct 3009884 TGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGTACTCGACGATTTCTGTGC 3009825
Query 147524 ACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGT 147583
|||| |||||||| || ||| |||| ||| ||||||||||| |||| |||||||| |
Sbjct 3009824 ACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGTTGCACGCAT 3009765
Query 147584 CTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTAT 147640
| ||||||||||||||||| ||| ||||| || |||| || | ||| ||||
Sbjct 3009764 CCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGGCGAACC--- 3009708
Query 147641 GCAGGTCCTGCGCTCGCACCCGCTGCCGATAG---CGGCCCTCGTTTTCGTACCGCTCGT 147697
|||| ||| || | | | | ||||| | |||||| ||||| ||
Sbjct 3009707 ACAGGGACTGAGC-CTTAACTG--TCCGATTGGCCTTTCCCTCGGCCTCGTATTTAAGGT 3009651
Query 147698 ACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACA 147757
||| | ||||||||||||||| | ||| ||||||||||||| ||||| ||||
Sbjct 3009650 ACAGCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTGTGCGGGCACA 3009591
Query 147758 TCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCG 147817
| || ||||| | || | ||| | ||||| |||||| ||||| || | ||| || |
Sbjct 3009590 TTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCAGAGGG 3009531
Query 147818 CGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGC 147876
| || | |||||||| || ||||| ||| |||| ||||| | |||
Sbjct 3009530 CATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTCAGTTCCAAGA 3009471
Query 147877 ACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT 147936
|| | | ||| || | ||||||||| || | |||| ||| | ||||| |||||
Sbjct 3009470 ACTCGA-AGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAGGCACCGGGCCGCTTG 3009412
Query 147937 CCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGG 147993
||| |||||||| || | || ||| ||||| || || |||| |||||| | |||
Sbjct 3009411 CCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGCAGCATGGGAACGAGG 3009352
Query 147994 CCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACG 148053
|| | | ||||| || ||| | || |||| ||| || | || ||
Sbjct 3009351 CCATTGGAGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCACGGATGCAATGGACA 3009292
Query 148054 TTAACGCCAATGCCG-CCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTA 148112
|| | |||||||||| |||||| |||| || || || || | ||| | | | |
Sbjct 3009291 TTCAGGCCAATGCCGCCCGCCG-ACTTGGAGATCATGGCACAGTGTTCCACCGACTTAAA 3009233
Query 148113 GATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAAT 148172
||||| ||||| || | | | | || | || || || | | |||||
Sbjct 3009232 AATGCCTTCGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGGACGAGAGCTGCGG--- 3009176
Query 148173 CCG---CGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGACTC 148227
||| ||| | || | ||| |||||||| ||||| || || || | ||| |
Sbjct 3009175 CCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTGTGTGAAGAAGCGCTCTGA--C 3009118
Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287
| || || ||||| | |||| | |||||||| || || || || || | ||| |||
Sbjct 3009117 AACAAATTGTATGTCTCCACAGCGGCATCGATGTCTTCACCATGGATTCCAATCGCCACG 3009058
Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCA 148347
||||| ||||||||||| || || ||||||| | | ||| |||| || | ||| |
Sbjct 3009057 CGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTACCGTTTCTCTTCAGCAAATACGAA 3008998
Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAA 148398
|| ||||| ||| |||||||||| || || |||| || | ||||||
Sbjct 3008997 CGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAAAGTCGCGATCGTAA 3008947
Score = 98.7 bits (108), Expect = 9e-16
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||| | ||||| || | | | ||||| || |||||||| ||||| | |||
Sbjct 2921405 ACGAAGGCGGAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 2921464
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||| ||||| || || | | |||| |||||||| ||||||||||| || ||
Sbjct 2921465 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCC 2921524
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|||||| || ||| || ||| | | ||| | ||| || | ||| || || || |
Sbjct 2921525 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAG 2921584
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || || || || || || | ||| ||||||||
Sbjct 2921585 AGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 2921626
>seq4978
Length=1564474
Score = 91.5 bits (100), Expect = 1e-13
Identities = 222/336 (66%), Gaps = 3/336 (1%)
Strand=Plus/Minus
Query 51543 ATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCGGA 51602
|| || || | |||||| |||| | | || | ||||||||||| |||||||||| |
Sbjct 342904 ATGCCAATAACGCCGCACCCGATCCTGGCACCAGCGTTGCCCGTGGACTTGCTCAGCTCA 342845
Query 51603 TGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGACG 51662
||| | ||| | || ||| | | || ||||| |||| |||| || | || |
Sbjct 342844 TGGCCACCCTTGCCCAAGTCATCGGGATCGGCATGAACTACCACGGTGCGCCCGATGATG 342785
Query 51663 CTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGTTG 51722
|| | |||| || ||||| ||| |||| | ||| || | |||| || | ||
Sbjct 342784 CTGTCGGCGCCAAAGAGCGTGATCTTCGAGTCGGTAATGTTGACCTTGGTGGGGCAGGTG 342725
Query 51723 GACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCG 51782
| | || |||| || || | ||||| | ||| || || | | |||||
Sbjct 342724 C---CAGTGGCATCGATGTTACCAAGATCGCCCAAGTGACGGTTCTCGTCAGCAGGAGCT 342668
Query 51783 CCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTG 51842
||||| || |||| ||||||||||| || | ||| ||||||||||| || ||
Sbjct 342667 CCGTGCTCCTTGCCATGAGGGTTGAAGTGGGGACCGGAGGACATGCAGCCGTTGGTGTTG 342608
Query 51843 TCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878
|| |||||||| || || |||||||| || || |||
Sbjct 342607 TCCCCGAATTCATGGACATGGAATCCATGGAGACCC 342572
>seq4863
Length=1240122
Score = 91.5 bits (100), Expect = 1e-13
Identities = 154/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||| | ||||| || | | | ||||| || || |||||||||||| || ||
Sbjct 1064100 ACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 1064041
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||| || ||||| || |||| | |||| |||||||| |||||||| || |||||
Sbjct 1064040 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCC 1063981
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || || || | | || | || || | |||||||| || |
Sbjct 1063980 CTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAG 1063921
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || || || || ||||| | ||| |||||||||
Sbjct 1063920 GGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATG 1063878
>seq4644
Length=1132839
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
||||| || | ||||||| || || |||||||||||| | ||| || || ||
Sbjct 752744 ACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCC 752685
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| || |||| |||| | |||||| |||||||| ||||| || || || ||
Sbjct 752684 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCTTGG 752625
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
||||| |||| | || | || |||| ||||||||||| | || | || ||
Sbjct 752624 ATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTT 752565
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|||||||| || || | || ||||||||
Sbjct 752564 CCAGTCAGGGTCTTCACAAAGATCTGCAT 752536
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
|||||||| | | ||||||| || || |||||||||||| | ||| || || ||
Sbjct 752516 ACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCC 752457
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| || |||| |||| | |||||| ||||||||||| || || || || ||
Sbjct 752456 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 752397
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || |||| | || | || |||| |||||||| || | || | || ||
Sbjct 752396 ATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTT 752337
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| ||||| || || | || ||||||||
Sbjct 752336 CCGGTCAGGGTCTTCACAAAGATCTGCAT 752308
>seq4810
Length=1195048
Score = 86.0 bits (94), Expect = 6e-12
Identities = 154/225 (68%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| |||| |||||| || | | | ||||| || || ||||||||||| | ||
Sbjct 316752 CGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTG 316693
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| ||| || ||||| || |||| | |||| |||||||| || ||||| || |||||
Sbjct 316692 CGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCC 316633
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || | | || | ||||||| ||||| || || |
Sbjct 316632 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGG 316573
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127
|| | || || || |||| ||| || | ||| ||||||||| ||
Sbjct 316572 GTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCATGCCT 316528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476580571772760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |