Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4765 361 5e-95 seq4978 91.5 1e-13 seq4863 91.5 1e-13 seq4644 89.7 5e-13 seq4810 86.0 6e-12 >seq4765 Length=3541379 Score = 361 bits (400), Expect = 5e-95 Identities = 1204/1851 (65%), Gaps = 48/1851 (3%) Strand=Plus/Minus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || || || || ||||| | |||||||| || ||||| |||||| |||||||| | Sbjct 3010773 GCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTTTTAAGGCCAGCCTTCCACGAGTAA 3010714 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691 ||| || || |||| || | || | ||||| ||||| || || |||||||| Sbjct 3010713 AAGTGTATGGATGTCAGCTTGCCATAGTTGGGCTCAGCCACATGAATGTTGAACGATTGA 3010654 Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTCATT 146751 || ||||| || || || ||| || || ||||| | ||| || ||| || Sbjct 3010653 CTCTGATCGATAAACGCACCGCGATCTGCGGCCATTTTAATGGTGGATTTCACAGAGATC 3010594 Query 146752 TCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATA 146811 |||||| | || |||||||| | ||| | | ||||| | || || || || ||| Sbjct 3010593 TCCCAAACCGTCTTGTACAGATCGCGAACATTCTGGGGAATGGCCTCGATATTCTGGATA 3010534 Query 146812 GAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAAAGGTTTAGTTTAAT 146870 ||||| | | || || || ||| | || || | | || || | | | Sbjct 3010533 GAGCCACGGCTGGAAATGATC-TGGTTCTTCATGTCATCATCCCACAAGTCCAGCTCAGT 3010475 Query 146871 GAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAG 146930 || || | || | || |||||||| || || ||||| | || || || | Sbjct 3010474 TAGATCCCGCAATAGGTGATGGTTGACCACCTGGAATTCGCCGGAGAGAACGCGGCGTGT 3010415 Query 146931 ATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGT 146990 ||| | ||| | ||| | ||||| || || || || ||||| | ||| ||||| |||| Sbjct 3010414 ATAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTTGCCCATTATCTGGGCAGTGGA 3010355 Query 146991 TGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTC 147050 ||| || |||||| ||||| | || || |||| | |||| ||| || Sbjct 3010354 TGCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAACGCCGTGTTTCTTGATCGATTC 3010295 Query 147051 CTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAG 147110 ||||| || ||||||||| | || ||| | || |||||||||||||||||| Sbjct 3010294 CTTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGTACCTTGTCCCACATGTCGTACTGGAG 3010235 Query 147111 CACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAA 147170 | ||| || |||| ||||| || | || || || ||| ||| |||| Sbjct 3010234 GATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATACGGGCCTTCGACCTGGGCCAG 3010175 Query 147171 TTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGAC 147230 |||||| || || || || |||||||| ||||| ||||| ||| |||| || |||| Sbjct 3010174 TTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTCAAAGATCTGTTGATTCAGGAG 3010115 Query 147231 GGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTG 147290 ||| || ||||| ||||| || | | || || | ||||||||||| | ||||| Sbjct 3010114 ACCCGCCTCCTCGCTTTCGTAGGGGAATCTCATCAGAATCAAGGCATCGGCGAGTCCCTG 3010055 Query 147291 GATACCGACGCCGATAGGTCGATGCTT----TTCG--TTGCTGCGCTTCGCGCTCGCTAT 147344 | || | ||| || || |||||| | |||| || ||| || || || | Sbjct 3010054 AACGCCAATGCCAATGGGGCGATGCCTCATATTCGATTTCCTGGCCTCCG-----GC-AG 3010001 Query 147345 GGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGT 147404 |||||| | |||| |||||||||||||| || || | ||| || || | Sbjct 3010000 GGGATAATAGTTGATGTCAATAATCTTGTTCAGATTCTTGGCCACAGTCTTGGTGACCTC 3009941 Query 147405 TTTGAGTTTCTCGAAATCATAAGTCCCGTCTT-CGACACGTACGCATTGGTTCACGGCGA 147463 || || |||| ||||| || ||| || || ||| || || ||| | |||| Sbjct 3009940 CTTCAGCTTCTTAAAATCGTACGTCTTTTCGGGCGTCACAAAC--AT--GTTGAGAGCGA 3009885 Query 147464 TAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGC 147523 | |||||||| ||||||||||| |||| |||| | ||||| |||||||| | || Sbjct 3009884 TGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGTACTCGACGATTTCTGTGC 3009825 Query 147524 ACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGT 147583 |||| |||||||| || ||| |||| ||| ||||||||||| |||| |||||||| | Sbjct 3009824 ACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGCTCTTCCTGTTGCACGCAT 3009765 Query 147584 CTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTAT 147640 | ||||||||||||||||| ||| ||||| || |||| || | ||| |||| Sbjct 3009764 CCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCTCGATGATGGCGAACC--- 3009708 Query 147641 GCAGGTCCTGCGCTCGCACCCGCTGCCGATAG---CGGCCCTCGTTTTCGTACCGCTCGT 147697 |||| ||| || | | | | ||||| | |||||| ||||| || Sbjct 3009707 ACAGGGACTGAGC-CTTAACTG--TCCGATTGGCCTTTCCCTCGGCCTCGTATTTAAGGT 3009651 Query 147698 ACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACA 147757 ||| | ||||||||||||||| | ||| ||||||||||||| ||||| |||| Sbjct 3009650 ACAGCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGACACTTGTGCGGGCACA 3009591 Query 147758 TCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCG 147817 | || ||||| | || | ||| | ||||| |||||| ||||| || | ||| || | Sbjct 3009590 TTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCAGAGGG 3009531 Query 147818 CGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGC 147876 | || | |||||||| || ||||| ||| |||| ||||| | ||| Sbjct 3009530 CATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTCTTTTTCAGTTCCAAGA 3009471 Query 147877 ACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT 147936 || | | ||| || | ||||||||| || | |||| ||| | ||||| ||||| Sbjct 3009470 ACTCGA-AGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAGGCACCGGGCCGCTTG 3009412 Query 147937 CCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGG 147993 ||| |||||||| || | || ||| ||||| || || |||| |||||| | ||| Sbjct 3009411 CCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGCAGCATGGGAACGAGG 3009352 Query 147994 CCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACG 148053 || | | ||||| || ||| | || |||| ||| || | || || Sbjct 3009351 CCATTGGAGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCACGGATGCAATGGACA 3009292 Query 148054 TTAACGCCAATGCCG-CCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTA 148112 || | |||||||||| |||||| |||| || || || || | ||| | | | | Sbjct 3009291 TTCAGGCCAATGCCGCCCGCCG-ACTTGGAGATCATGGCACAGTGTTCCACCGACTTAAA 3009233 Query 148113 GATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAAT 148172 ||||| ||||| || | | | | || | || || || | | ||||| Sbjct 3009232 AATGCCTTCGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGGACGAGAGCTGCGG--- 3009176 Query 148173 CCG---CGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGACTC 148227 ||| ||| | || | ||| |||||||| ||||| || || || | ||| | Sbjct 3009175 CCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTGTGTGAAGAAGCGCTCTGA--C 3009118 Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287 | || || ||||| | |||| | |||||||| || || || || || | ||| ||| Sbjct 3009117 AACAAATTGTATGTCTCCACAGCGGCATCGATGTCTTCACCATGGATTCCAATCGCCACG 3009058 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCA 148347 ||||| ||||||||||| || || ||||||| | | ||| |||| || | ||| | Sbjct 3009057 CGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTACCGTTTCTCTTCAGCAAATACGAA 3008998 Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAA 148398 || ||||| ||| |||||||||| || || |||| || | |||||| Sbjct 3008997 CGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAAAGTCGCGATCGTAA 3008947 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | | ||||| || |||||||| ||||| | ||| Sbjct 2921405 ACGAAGGCGGAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 2921464 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | | |||| |||||||| ||||||||||| || || Sbjct 2921465 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCC 2921524 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| || ||| | | ||| | ||| || | ||| || || || | Sbjct 2921525 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAG 2921584 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | ||| |||||||| Sbjct 2921585 AGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 2921626 >seq4978 Length=1564474 Score = 91.5 bits (100), Expect = 1e-13 Identities = 222/336 (66%), Gaps = 3/336 (1%) Strand=Plus/Minus Query 51543 ATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCGGA 51602 || || || | |||||| |||| | | || | ||||||||||| |||||||||| | Sbjct 342904 ATGCCAATAACGCCGCACCCGATCCTGGCACCAGCGTTGCCCGTGGACTTGCTCAGCTCA 342845 Query 51603 TGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGACG 51662 ||| | ||| | || ||| | | || ||||| |||| |||| || | || | Sbjct 342844 TGGCCACCCTTGCCCAAGTCATCGGGATCGGCATGAACTACCACGGTGCGCCCGATGATG 342785 Query 51663 CTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGTTG 51722 || | |||| || ||||| ||| |||| | ||| || | |||| || | || Sbjct 342784 CTGTCGGCGCCAAAGAGCGTGATCTTCGAGTCGGTAATGTTGACCTTGGTGGGGCAGGTG 342725 Query 51723 GACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCG 51782 | | || |||| || || | ||||| | ||| || || | | ||||| Sbjct 342724 C---CAGTGGCATCGATGTTACCAAGATCGCCCAAGTGACGGTTCTCGTCAGCAGGAGCT 342668 Query 51783 CCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTG 51842 ||||| || |||| ||||||||||| || | ||| ||||||||||| || || Sbjct 342667 CCGTGCTCCTTGCCATGAGGGTTGAAGTGGGGACCGGAGGACATGCAGCCGTTGGTGTTG 342608 Query 51843 TCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 || |||||||| || || |||||||| || || ||| Sbjct 342607 TCCCCGAATTCATGGACATGGAATCCATGGAGACCC 342572 >seq4863 Length=1240122 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||| || | | | ||||| || || |||||||||||| || || Sbjct 1064100 ACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 1064041 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| | |||| |||||||| |||||||| || ||||| Sbjct 1064040 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCC 1063981 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || || | |||||||| || | Sbjct 1063980 CTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAG 1063921 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || ||||| | ||| ||||||||| Sbjct 1063920 GGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATG 1063878 >seq4644 Length=1132839 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | ||||||| || || |||||||||||| | ||| || || || Sbjct 752744 ACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCC 752685 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| | |||||| |||||||| ||||| || || || || Sbjct 752684 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCTTGG 752625 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| |||| | || | || |||| ||||||||||| | || | || || Sbjct 752624 ATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTT 752565 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || | || |||||||| Sbjct 752564 CCAGTCAGGGTCTTCACAAAGATCTGCAT 752536 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||||| || || |||||||||||| | ||| || || || Sbjct 752516 ACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCC 752457 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| | |||||| ||||||||||| || || || || || Sbjct 752456 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 752397 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || |||| |||||||| || | || | || || Sbjct 752396 ATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTTT 752337 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || || | || |||||||| Sbjct 752336 CCGGTCAGGGTCTTCACAAAGATCTGCAT 752308 >seq4810 Length=1195048 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| |||||| || | | | ||||| || || ||||||||||| | || Sbjct 316752 CGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTG 316693 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || ||||| || |||| | |||| |||||||| || ||||| || ||||| Sbjct 316692 CGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCC 316633 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | ||||||| ||||| || || | Sbjct 316632 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGG 316573 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | || || || |||| ||| || | ||| ||||||||| || Sbjct 316572 GTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCATGCCT 316528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476580571772760