Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq4969 159 3e-34 >seq4969 Length=1161901 Score = 159 bits (176), Expect = 3e-34 Identities = 210/285 (74%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 5333 AGAAGCACTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTT 5392 ||| || ||||||||||| ||| || | ||||||||| ||| |||| |||| || | Sbjct 226130 AGATGCGCTCGCAGATGAACTGGGCGATGCGGTCGCCGCGCTTCACCTCGAA-CTC-CAC 226073 Query 5393 GGCCGA--AGTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCC 5450 | |||| |||||| ||||| || |||||||| || ||| ||||| |||||| ||||| Sbjct 226072 GTCCGAGTGGTTGAACAGCACGACGCCCAGGTTGCCACGGTAGTCCTCGTCCACCACGCC 226013 Query 5451 CGCTCCCACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTA 5510 |||||||| || | |||||| || || || |||||||| | || |||||||| ||||| Sbjct 226012 GGCTCCCACGTCGATGAAGTTCTTCACGGCCAGACCGGAGCGTGGGGCCACGCGTCCGTA 225953 Query 5511 GCAGCCGTATGGCGGGTGGATCTGCAGATCGGTCAGCACTACCG-CGCGCCCCATCGGCG 5569 | |||| | ||| |||| |||||| |||||| ||| || | | ||| | | | || Sbjct 225952 GGAGCCCTCGGGCACCTGGACCTGCAGGTCGGTCTTCACAACGGCCTTGCCTCGT-GCCG 225894 Query 5570 GCAAGGTGTAGTCGTAAGCGCTGTACAGGTCGTAGCCGGCCGCCT 5614 ||| |||||| |||||| |||||| |||||| |||| Sbjct 225893 GCACCACAATGTCGTAGGCGCTGCGCAGGTCCACGCCGGCAGCCT 225849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447782422532760