Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4765 105 6e-18 >seq4765 Length=3541379 Score = 105 bits (116), Expect = 6e-18 Identities = 301/457 (66%), Gaps = 8/457 (2%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 |||||||| || || | ||| || || || || || | || || ||||| || || || Sbjct 3010794 ACGGTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTTTTA 3010735 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 | || || ||| || ||| ||||| |||| || | |||| | || || ||| Sbjct 3010734 AGGCCAGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGGGCTCAGCC 3010675 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || || || | |||||| ||||||||||| | | ||||| ||||||||||| || Sbjct 3010674 ACATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCAT-TTT 3010616 Query 136819 AATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 ||| || ||| | | || |||||| | || || | || || ||||| | || Sbjct 3010615 AATGGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACAGATCGCGAACATTCTGGGG 3010556 Query 136878 AATTTCATCGATATTCTGTACAGATCC---GTTGTTTTTGATGATTTTCATCATGAGATC 136934 ||| | ||||||||||| | ||| || | || |||| ||| ||||| ||| Sbjct 3010555 AATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTCATGTCATC 3010496 Query 136935 AGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGATA 136994 | || | | || ||| | || | | || || || || || || || | Sbjct 3010495 A-TC--CCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACCTGGAA 3010439 Query 136995 TTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTT 137054 |||||| || || || | |||| || | ||| | ||| |||||||||| |||||||| Sbjct 3010438 TTCGCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGATTCGTT 3010379 Query 137055 GTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATG 137091 ||| |||| ||||| ||||| | || || |||||| Sbjct 3010378 GTTGCCCATTATCTGGGCAGTGGATGCCGTGGGCATG 3010342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445065797121120