Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq4761 224 1e-53 >seq4761 Length=1439414 Score = 224 bits (248), Expect = 1e-53 Identities = 353/498 (71%), Gaps = 12/498 (2%) Strand=Plus/Plus Query 146842 AAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGG-GTT 146900 || || || ||||||| |||| | | ||| |||||||| || || || || || Sbjct 1350149 AAGTCCTCAATGTCCTGCACCTTGCGCTTGATCACCAGCTTGGGAAACGGACGCGGAGTG 1350208 Query 146901 C-CTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCA 146959 | ||| |||||| ||||| || ||||| || || |||||||| || ||||| |||| Sbjct 1350209 CGCTG--CAGCTGCTCCTTCAGCGGATCCACATGATTTAGGTAGACATGAGCGTCGCCCA 1350266 Query 146960 GGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCA 147019 ||| || |||||||| || ||||| || || ||||| ||||| | ||||| ||| |||| Sbjct 1350267 TGGTATGAACAAAGTCACCAGGCTTCAGACCTGTCACATGGGCTATCATGTGGGTAAGCA 1350326 Query 147020 GCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACA 147079 | | ||| ||| |||||||| || || ||||| |||||||| | ||||||||||| Sbjct 1350327 GGGCGTAAGAGGCGATGTTGAATGGCACGCCCAGACCCATGTCAGCGCTCCTCTGGTACA 1350386 Query 147080 GCTGGCACGAGAGCTCCCC---GTC---GGCCACGTAAAACTGGCACAGGATGTGGCACG 147133 |||| || || | ||| || ||| || ||| | ||||| |||| ||| || | Sbjct 1350387 GCTGACAGGACAACTCGCCACGGTCCTGGGATACGAAGAACTGCGCCAGGCAGTGACATG 1350446 Query 147134 GCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGC 147193 ||||||||||||| || | ||| ||| ||||| || || | | | |||||| Sbjct 1350447 GCGGCAGCGCCATCTTTGGTATATCCAGGGGATTCCATGCGGACATGATGATGCGCCTGT 1350506 Query 147194 TCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCC 147253 | || || |||| ||| ||||| ||| | ||||||||| | ||||||||| | Sbjct 1350507 CCGACGGATTGTTCTTTATCGTCTCGATCACCTGACGCAGCTGGTCGATGCCCTGGCCGC 1350566 Query 147254 CGTAGTTTGTC-CCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTAC 147312 |||| | ||| ||||| ||| ||||||||||||| ||||||||||||||| Sbjct 1350567 TGTAG-TCGTCGTCGCAGGTGCGATACTCTGCCCCAAAGTGCCGCCACTGGAAGCCGTAT 1350625 Query 147313 ACTGGCCCCAGGTCGCCG 147330 || || |||| || ||| Sbjct 1350626 ACCGGGCCCAAATCTCCG 1350643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583450503602400