Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq4678 178 2e-38
seq4676 170 3e-36
seq4164 109 8e-18
seq1681 109 8e-18
seq1544 109 8e-18
seq840 104 3e-16
seq4765 93.3 6e-13
>seq4678
Length=1229792
Score = 178 bits (196), Expect = 2e-38
Identities = 335/485 (69%), Gaps = 16/485 (3%)
Strand=Plus/Minus
Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA---CACGGTCC 1455852
|||||||||||||||| ||||||| || ||||| ||| | | || ||| |
Sbjct 1146942 AGGCCGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGACTTGTCCAAGGATCTCACCG--- 1146886
Query 1455853 ACTGGGTGTCGC-TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911
||||| |||| | | || ||||| ||||| |||||| || || || ||||| |||
Sbjct 1146885 ACTGGCA-TCGCCTTAAGGATGACGAACGCCACTTCATCTCCCATGTGCTGGCCTTCTTT 1146827
Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971
|||||| |||||| || || |||||| |||| | ||||||| | ||||| ||
Sbjct 1146826 -GCCGCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGCCAGGAGGTACA 1146768
Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031
| | ||||| || | ||||| || |||||||||||||| || ||| | || || ||
Sbjct 1146767 GATCACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAACGTGCATTCGGA 1146708
Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTT 1456091
| ||| | ||||||||||| ||| | |||||| | || ||| | || ||
Sbjct 1146707 GATGTACAGTGTGCTGATCGACACTTACATTCGGGACCCACACCAGCGGGAATATCTGTT 1146648
Query 1456092 TCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA- 1456150
||||| || || ||||| |||||| | ||||| |||||||| || ||||
Sbjct 1146647 CAATGCCATTGAGACCATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCCCTGTCCTGGAT 1146588
Query 1456151 -TCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGG 1456208
|| | | | |||| |||||| ||||| || | | ||||||| ||||||||
Sbjct 1146587 CTCTTCCAAGTCGGCC----AACTTTGGGGAGCGCATCATTGCGTTTGCCGCCGTCGAGG 1146532
Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268
|||| || ||| ||||| || | |||| || ||||| |||||||||||||| ||||
Sbjct 1146531 GCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGCCTGATGC 1146472
Query 1456269 CCGGT 1456273
| |||
Sbjct 1146471 CTGGT 1146467
Score = 107 bits (118), Expect = 3e-17
Identities = 160/222 (72%), Gaps = 5/222 (2%)
Strand=Plus/Minus
Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580
|||||||| ||| || || || || ||| | ||||| ||| ||| | ||||||||
Sbjct 1146357 AGATCATCCGCGACGCTGTGGACATTGAGCAGGAGTTCCTCACCGATGCCCTGCCGGTTA 1146298
Query 1456581 CGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639
|| |||||||||||| | ||| | |||| ||||||||||| ||| || ||||| |
Sbjct 1146297 ATCTGATCGGCATGAACTGTGACC--TGATGTCGCAGTACATTGAGTTT-GTGGCCGATC 1146241
Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699
| ||||| | | ||| ||| ||| ||| |||| || || |||||| |
Sbjct 1146240 GTCTGCTGGTCGAGCTGGGCGTGGGA-AAGATCTACAACACCAAGAATCCGTTCAACTTC 1146182
Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
|||||| |||||||||| || |||||||||||||| || |||
Sbjct 1146181 ATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTTTGAG 1146140
>seq4676
Length=1384158
Score = 170 bits (188), Expect = 3e-36
Identities = 247/346 (71%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931
|||||||| ||||| || || ||| | || |||||||| | || || | |||||||
Sbjct 516167 AAGCGCAGCATGGCGCAGCGAGACTGGATGGGCTCGATGATC-TTCTCGCTGGTGTTGCA 516225
Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991
||| ||||| || ||||| || | | | |||||||||| || || ||||| ||
Sbjct 516226 GGCAAGGGCGAAGCGCGTGGTGCTACTGTAGATTTCCATGGTGCGGCGCAGCGCCTGCTG 516285
Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051
||| || ||| | || |||||||||||| ||||| | ||||||||| || ||| ||||
Sbjct 516286 GGCGCCCTCCGTCATGCTGTCGGCCTCGTCCAGGATCACGATCTTGTGACGGCCGCGCGG 516345
Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111
||| ||| | | | ||| ||||| | |||||||| || || | ||| ||
Sbjct 516346 CAGTGTCACCTTCTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCGATGCCCCG 516405
Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171
||| | ||| ||||| || ||||| || ||||| | | | | |||| |||| |||
Sbjct 516406 CTCATTCGAGGCGTTCAGCTCGAGGACCGCCTCTTTGTAGCTGTCTCCCAGCAGGATGCG 516465
Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217
|||||||||| |||| | |||||||||||| ||| || ||||||
Sbjct 516466 CGCCAGGCACTGGATGGTGGTGGTCTTGCCCACGCCCGGAGGACCC 516511
>seq4164
Length=12022
Score = 109 bits (120), Expect = 8e-18
Identities = 166/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||||||||| || |||||||| || ||||| | ||| ||| ||| ||| |
Sbjct 214 ATCTACAAGGTCCTGAAGCAGGTCCA-TCCCGA--CACTGG--CAT-TTCCTCGAAGGCG 267
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| ||||| || ||||| |||| ||||| | ||||||| |
Sbjct 268 ATGAACATCATGAACAGCTTTGTGAATGACATCTTCGAGCGCATTGCTGCCGAGGCTTCT 327
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| ||||||| || |||||||||| || ||| || || || ||||| || || ||
Sbjct 328 CGTCTGGCGCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAATCCAAACTGCTGTT 387
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||| || ||| ||| || |||| | |||||||||| ||||| ||||
Sbjct 388 CGTCTGCTCCTGCCCGGAGAGTTGGCAAAGCACGCCGTCAGTGAGGGAACCA 439
>seq1681
Length=1113
Score = 109 bits (120), Expect = 8e-18
Identities = 166/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||||||||| || |||||||| || ||||| | ||| ||| ||| ||| |
Sbjct 185 ATCTACAAGGTCCTGAAGCAGGTCCA-TCCCGA--CACTGG--CAT-TTCCTCGAAGGCG 238
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| ||||| || ||||| |||| ||||| | ||||||| |
Sbjct 239 ATGAGCATCATGAACAGCTTTGTGAATGACATCTTCGAGCGCATTGCTGCCGAGGCTTCT 298
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| ||||||| || |||||||||| || ||| || || || ||||| || || ||
Sbjct 299 CGTCTGGCGCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAATCCAAACTGCTGTT 358
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||| || ||| ||| || |||| | |||||||||| ||||| ||||
Sbjct 359 CGTCTGCTCCTGCCCGGAGAGTTGGCAAAGCACGCCGTCAGTGAGGGAACCA 410
>seq1544
Length=1029
Score = 109 bits (120), Expect = 8e-18
Identities = 166/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||||||||| || |||||||| || ||||| | ||| ||| ||| ||| |
Sbjct 665 ATCTACAAGGTCCTGAAGCAGGTCCA-TCCCGA--CACTGG--CAT-TTCCTCGAAGGCG 718
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| ||||| || ||||| |||| ||||| | ||||||| |
Sbjct 719 ATGAGCATCATGAACAGCTTTGTGAATGACATCTTCGAGCGCATTGCTGCCGAGGCTTCT 778
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| ||||||| || |||||||||| || ||| || || || ||||| || || ||
Sbjct 779 CGTCTGGCGCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAATCCAAACTGCTGTT 838
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||| || ||| ||| || |||| | |||||||||| ||||| ||||
Sbjct 839 CGTCTGCTCCTGCCCGGAGAGTTGGCAAAGCACGCCGTCAGTGAGGGAACCA 890
>seq840
Length=22412
Score = 104 bits (114), Expect = 3e-16
Identities = 165/232 (71%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||||||||| || |||||||| || ||||| | ||| ||| || ||| |
Sbjct 7308 ATCTACAAGGTCCTGAAGCAGGTCCA-TCCCGA--CACTGG--CAT-TTCGTCGAAGGCG 7255
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| ||||| || ||||| |||| ||||| | ||||||| |
Sbjct 7254 ATGAGCATCATGAACAGCTTTGTGAATGACATCTTCGAGCGCATTGCTGCCGAGGCTTCT 7195
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| ||||||| || |||||||||| || ||| || || || ||||| || || ||
Sbjct 7194 CGTCTGGCGCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAATCCAAACTGCTGTT 7135
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||| || ||| ||| || |||| | |||||||||| ||||| ||||
Sbjct 7134 CGTCTGCTCCTGCCCGGAGAGTTGGCAAAGCACGCCGTCAGTGAGGGAACCA 7083
>seq4765
Length=3541379
Score = 93.3 bits (102), Expect = 6e-13
Identities = 108/143 (76%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 262927 AACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACC 262986
||||| |||||||||| | |||||||||||| | || | ||||| ||||||||| |
Sbjct 3010322 AACTCTCTGCTCGTGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAAC 3010381
Query 262987 GAGGCGTTCGAG--GT-CATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGAC 263043
|| | |||||| || || |||| || ||||| || |||||||| ||||| |||||
Sbjct 3010382 GAATCCTTCGAGCCGTACACCACG---AATATCTATACACGCCGCGTTCTCTCCGGCGAA 3010438
Query 263044 TTTACCGTGGTCAACCGCCACCT 263066
|| |||||||||| |||||
Sbjct 3010439 TTCCAGGTGGTCAACCATCACCT 3010461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177315341100842
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