Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4678 178 2e-38 seq4676 170 3e-36 seq4164 109 8e-18 seq1681 109 8e-18 seq1544 109 8e-18 seq840 104 3e-16 seq4765 93.3 6e-13 >seq4678 Length=1229792 Score = 178 bits (196), Expect = 2e-38 Identities = 335/485 (69%), Gaps = 16/485 (3%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA---CACGGTCC 1455852 |||||||||||||||| ||||||| || ||||| ||| | | || ||| | Sbjct 1146942 AGGCCGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGACTTGTCCAAGGATCTCACCG--- 1146886 Query 1455853 ACTGGGTGTCGC-TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911 ||||| |||| | | || ||||| ||||| |||||| || || || ||||| ||| Sbjct 1146885 ACTGGCA-TCGCCTTAAGGATGACGAACGCCACTTCATCTCCCATGTGCTGGCCTTCTTT 1146827 Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971 |||||| |||||| || || |||||| |||| | ||||||| | ||||| || Sbjct 1146826 -GCCGCCTCCGATGGTATTGTCAACGAGAATCTGGTGGAGCGCTTTAGCCAGGAGGTACA 1146768 Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 | | ||||| || | ||||| || |||||||||||||| || ||| | || || || Sbjct 1146767 GATCACCGAGGCCCGCTGCTTTTATGGCTTCCAGATCGCCATGGAGAACGTGCATTCGGA 1146708 Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTT 1456091 | ||| | ||||||||||| ||| | |||||| | || ||| | || || Sbjct 1146707 GATGTACAGTGTGCTGATCGACACTTACATTCGGGACCCACACCAGCGGGAATATCTGTT 1146648 Query 1456092 TCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA- 1456150 ||||| || || ||||| |||||| | ||||| |||||||| || |||| Sbjct 1146647 CAATGCCATTGAGACCATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCCCTGTCCTGGAT 1146588 Query 1456151 -TCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGG 1456208 || | | | |||| |||||| ||||| || | | ||||||| |||||||| Sbjct 1146587 CTCTTCCAAGTCGGCC----AACTTTGGGGAGCGCATCATTGCGTTTGCCGCCGTCGAGG 1146532 Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 |||| || ||| ||||| || | |||| || ||||| |||||||||||||| |||| Sbjct 1146531 GCATTTTCTTCAGCGGCAGCTTTGCCTCCATTTTCTGGCTGAAGAAGCGCGGCCTGATGC 1146472 Query 1456269 CCGGT 1456273 | ||| Sbjct 1146471 CTGGT 1146467 Score = 107 bits (118), Expect = 3e-17 Identities = 160/222 (72%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| ||| || || || || ||| | ||||| ||| ||| | |||||||| Sbjct 1146357 AGATCATCCGCGACGCTGTGGACATTGAGCAGGAGTTCCTCACCGATGCCCTGCCGGTTA 1146298 Query 1456581 CGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 || |||||||||||| | ||| | |||| ||||||||||| ||| || ||||| | Sbjct 1146297 ATCTGATCGGCATGAACTGTGACC--TGATGTCGCAGTACATTGAGTTT-GTGGCCGATC 1146241 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 | ||||| | | ||| ||| ||| ||| |||| || || |||||| | Sbjct 1146240 GTCTGCTGGTCGAGCTGGGCGTGGGA-AAGATCTACAACACCAAGAATCCGTTCAACTTC 1146182 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| |||||||||| || |||||||||||||| || ||| Sbjct 1146181 ATGGAGATGATCTCGCTGGATGGCAAGACCAACTTCTTTGAG 1146140 >seq4676 Length=1384158 Score = 170 bits (188), Expect = 3e-36 Identities = 247/346 (71%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 |||||||| ||||| || || ||| | || |||||||| | || || | ||||||| Sbjct 516167 AAGCGCAGCATGGCGCAGCGAGACTGGATGGGCTCGATGATC-TTCTCGCTGGTGTTGCA 516225 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 ||| ||||| || ||||| || | | | |||||||||| || || ||||| || Sbjct 516226 GGCAAGGGCGAAGCGCGTGGTGCTACTGTAGATTTCCATGGTGCGGCGCAGCGCCTGCTG 516285 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 ||| || ||| | || |||||||||||| ||||| | ||||||||| || ||| |||| Sbjct 516286 GGCGCCCTCCGTCATGCTGTCGGCCTCGTCCAGGATCACGATCTTGTGACGGCCGCGCGG 516345 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 ||| ||| | | | ||| ||||| | |||||||| || || | ||| || Sbjct 516346 CAGTGTCACCTTCTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCGATGCCCCG 516405 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171 ||| | ||| ||||| || ||||| || ||||| | | | | |||| |||| ||| Sbjct 516406 CTCATTCGAGGCGTTCAGCTCGAGGACCGCCTCTTTGTAGCTGTCTCCCAGCAGGATGCG 516465 Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 |||||||||| |||| | |||||||||||| ||| || |||||| Sbjct 516466 CGCCAGGCACTGGATGGTGGTGGTCTTGCCCACGCCCGGAGGACCC 516511 >seq4164 Length=12022 Score = 109 bits (120), Expect = 8e-18 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || |||||||| || ||||| | ||| ||| ||| ||| | Sbjct 214 ATCTACAAGGTCCTGAAGCAGGTCCA-TCCCGA--CACTGG--CAT-TTCCTCGAAGGCG 267 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| ||||| || ||||| |||| ||||| | ||||||| | Sbjct 268 ATGAACATCATGAACAGCTTTGTGAATGACATCTTCGAGCGCATTGCTGCCGAGGCTTCT 327 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || |||||||||| || ||| || || || ||||| || || || Sbjct 328 CGTCTGGCGCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAATCCAAACTGCTGTT 387 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| || ||| ||| || |||| | |||||||||| ||||| |||| Sbjct 388 CGTCTGCTCCTGCCCGGAGAGTTGGCAAAGCACGCCGTCAGTGAGGGAACCA 439 >seq1681 Length=1113 Score = 109 bits (120), Expect = 8e-18 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || |||||||| || ||||| | ||| ||| ||| ||| | Sbjct 185 ATCTACAAGGTCCTGAAGCAGGTCCA-TCCCGA--CACTGG--CAT-TTCCTCGAAGGCG 238 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| ||||| || ||||| |||| ||||| | ||||||| | Sbjct 239 ATGAGCATCATGAACAGCTTTGTGAATGACATCTTCGAGCGCATTGCTGCCGAGGCTTCT 298 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || |||||||||| || ||| || || || ||||| || || || Sbjct 299 CGTCTGGCGCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAATCCAAACTGCTGTT 358 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| || ||| ||| || |||| | |||||||||| ||||| |||| Sbjct 359 CGTCTGCTCCTGCCCGGAGAGTTGGCAAAGCACGCCGTCAGTGAGGGAACCA 410 >seq1544 Length=1029 Score = 109 bits (120), Expect = 8e-18 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || |||||||| || ||||| | ||| ||| ||| ||| | Sbjct 665 ATCTACAAGGTCCTGAAGCAGGTCCA-TCCCGA--CACTGG--CAT-TTCCTCGAAGGCG 718 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| ||||| || ||||| |||| ||||| | ||||||| | Sbjct 719 ATGAGCATCATGAACAGCTTTGTGAATGACATCTTCGAGCGCATTGCTGCCGAGGCTTCT 778 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || |||||||||| || ||| || || || ||||| || || || Sbjct 779 CGTCTGGCGCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAATCCAAACTGCTGTT 838 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| || ||| ||| || |||| | |||||||||| ||||| |||| Sbjct 839 CGTCTGCTCCTGCCCGGAGAGTTGGCAAAGCACGCCGTCAGTGAGGGAACCA 890 >seq840 Length=22412 Score = 104 bits (114), Expect = 3e-16 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || |||||||| || ||||| | ||| ||| || ||| | Sbjct 7308 ATCTACAAGGTCCTGAAGCAGGTCCA-TCCCGA--CACTGG--CAT-TTCGTCGAAGGCG 7255 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| ||||| || ||||| |||| ||||| | ||||||| | Sbjct 7254 ATGAGCATCATGAACAGCTTTGTGAATGACATCTTCGAGCGCATTGCTGCCGAGGCTTCT 7195 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || |||||||||| || ||| || || || ||||| || || || Sbjct 7194 CGTCTGGCGCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAATCCAAACTGCTGTT 7135 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| || ||| ||| || |||| | |||||||||| ||||| |||| Sbjct 7134 CGTCTGCTCCTGCCCGGAGAGTTGGCAAAGCACGCCGTCAGTGAGGGAACCA 7083 >seq4765 Length=3541379 Score = 93.3 bits (102), Expect = 6e-13 Identities = 108/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 262927 AACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACC 262986 ||||| |||||||||| | |||||||||||| | || | ||||| ||||||||| | Sbjct 3010322 AACTCTCTGCTCGTGGCCCCCATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAAC 3010381 Query 262987 GAGGCGTTCGAG--GT-CATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGAC 263043 || | |||||| || || |||| || ||||| || |||||||| ||||| ||||| Sbjct 3010382 GAATCCTTCGAGCCGTACACCACG---AATATCTATACACGCCGCGTTCTCTCCGGCGAA 3010438 Query 263044 TTTACCGTGGTCAACCGCCACCT 263066 || |||||||||| ||||| Sbjct 3010439 TTCCAGGTGGTCAACCATCACCT 3010461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177315341100842