Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4764 141 8e-29 seq4810 140 3e-28 seq4644 134 1e-26 seq4863 116 3e-21 seq4765 109 5e-19 seq4969 84.2 2e-11 >seq4764 Length=1750656 Score = 141 bits (156), Expect = 8e-29 Identities = 209/291 (72%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190 |||||||||| || ||| || ||| | || || || |||||||| | | |||| | Sbjct 341582 TGTGGAACGCGGCGCAACTGCAGCTGGTTCGCGAGGGCAAAATGCATGGTTTCTTGCGCA 341641 Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCG-CGCTCGTTCAT 44249 |||| ||| ||||||||| | |||||| | | || | | | |||||| | Sbjct 341642 TGTACTGGGCCAAGAAGATCCTCGAGTGGA-GCCCCACGCCGGAGCAGGCGCTCGAGTAC 341700 Query 44250 GCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGA 44309 |||||| ||||||||||||||||| ||||||| ||||| |||||||| || || || Sbjct 341701 GCCATCCTGCTGAACGACAAGTACAGCCTGGACGGGCGCGATCCCAACGGCTATGTGGGT 341760 Query 44310 TGTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTACGGC 44369 || ||||||||||| |||| |||||||| | || ||| |||| |||||| ||| Sbjct 341761 TGCATGTGGTCCATCGGCGGCGTCCACGATATGGGCTGGAAGGAGCGGGCCATCTTCGGT 341820 Query 44370 AAAGTGCGCTACATGAACTACAACGGTTG-CGTCAGAAAGTTTGATGTAAA 44419 || | || |||||||| ||| | || || || | | |||||||| || || Sbjct 341821 AAGATTCGGTACATGAATTACCAAGGCTGTCGGC-GCAAGTTTGACGTGAA 341870 >seq4810 Length=1195048 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || |||||||| || || |||||| || ||||||||||||| | Sbjct 316986 CCGCCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGAC 316927 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| ||||||||||| || ||||| |||| ||||||||||| | ||| Sbjct 316926 AAGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316867 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | |||||| | || ||| Sbjct 316866 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGGCTCGACC 316807 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || |||||||| || || || |||||||| Sbjct 316806 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 316760 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| || ||| || |||| ||||||||||| || ||||| Sbjct 316495 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCAAA 316436 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | |||| || |||||||||| |||||| ||| | | Sbjct 316435 GATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 316376 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | || ||||| | ||||| || || || |||||||| || || Sbjct 316375 CTCGATTGTGTCGGAGGGCTCGACCTCAAGGGTGATAGTCTTGCCGGTCAAAGTCTTGAC 316316 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 316315 GAAGATTTGCAT 316304 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 316723 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAA 316664 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | |||| || |||||||||| |||||| ||| | | Sbjct 316663 GATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 316604 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| | || ||||| | ||||| || || || |||||||| || || Sbjct 316603 CTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGAC 316544 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 316543 GAAGATCTGCAT 316532 >seq4644 Length=1132839 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || |||||| || |||||||| |||| | ||| || |||| || Sbjct 752517 CACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTC 752458 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || ||||| |||||||| || | ||| | | |||||||||| Sbjct 752457 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTG 752398 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | |||||| | |||||||||| ||||| || || Sbjct 752397 GATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTT 752338 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| || |||||||| |||||||||| Sbjct 752337 TCCGGTCAGGGTCTTCACAAAGATCTGCATTC 752306 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || |||||| || |||||||| |||| | ||| || |||| || Sbjct 751832 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTC 751773 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || ||||| |||||||| || | ||| | | |||||||||| Sbjct 751772 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTG 751713 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | ||||| | ||| ||||||| ||||| || || Sbjct 751712 GATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAACCTCCAAGGTGATGGTCTT 751653 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || ||||| ||||||||||| ||||||||| Sbjct 751652 TCCAGTCAAGGTTTTCACAAAGATCTGCATT 751622 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || |||||| || |||||||| |||| | ||| || |||| || Sbjct 752289 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTC 752230 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || ||||| |||||||| || | ||| | | |||||||||| Sbjct 752229 CAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTG 752170 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | |||||| | |||||||||| ||||| || || Sbjct 752169 GATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACCTCCAAGGTGATGGTCTT 752110 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | ||| ||||| || |||||||||| Sbjct 752109 TCCGGTAAGAGTCTTCACGAAGATCTGCATTC 752078 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || |||||| || |||||||| |||| | ||| || |||| || Sbjct 752745 CACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTC 752686 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || ||||| |||||||| || | || | | ||||||||| Sbjct 752685 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGTATTCCCTCCTTGTCTTG 752626 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||| || ||||| | | | | |||||| | ||||| |||| ||||| || || Sbjct 752625 GATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTT 752566 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| || |||||||| |||||||||| Sbjct 752565 TCCAGTCAGGGTCTTCACAAAGATCTGCATTC 752534 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || |||||| || |||||||| || | | ||| || | || || Sbjct 752061 CACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTC 752002 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || || | |||||||| || | ||| | | |||||||||| Sbjct 752001 CAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTG 751942 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT-TT 35705 |||||| ||||| | | | | |||||| | ||||| |||| ||||| || || Sbjct 751941 GATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTT 751882 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | | || | ||| |||||||| |||||||||| Sbjct 751881 TCCGAGTAAGAGTCTTCACAAAGATCTGCATTC 751849 >seq4863 Length=1240122 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||| || |||||||| |||| | Sbjct 1064105 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1064046 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || ||||| |||| |||||||| || | ||| Sbjct 1064045 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 1063986 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | ||||| | |||||| Sbjct 1063985 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACC 1063926 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | |||||||| || |||||||| Sbjct 1063925 TCCAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879 >seq4765 Length=3541379 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || || ||| |||||| |||||||| || || | Sbjct 2921400 CCACCACGAAGGCGGAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAG 2921459 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || ||||| |||| |||||||| || | |||| Sbjct 2921460 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGA 2921519 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || |||||| ||||| || | | || | | ||||| || ||| ||| Sbjct 2921520 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACC 2921579 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTG 35742 || | ||||| || || ||||| | || ||||| || |||||||| |||| Sbjct 2921580 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTTGTG 2921632 >seq4969 Length=1161901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 235/357 (66%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 41101 CCTGTAGACCCAAAACCACCACCTCCGCGTTCCGTCACGTCCAACGACTCGACCAGCTTT 41160 || || || || || ||||| ||||||| || || | |||| | |||||||||| Sbjct 226203 CCGGTGGAGCCGAATCCACCTTCTCCGCGCTCAGTGTCCTCCAGCTTGTCGACCAGCTCC 226144 Query 41161 GGCGTGGCAATGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACC 41220 || | | | |||||||||| ||| | ||| |||| || || || | ||||| Sbjct 226143 AGCTCCGGATAGAAGATGCGCTCGCAGATGAACTGGGCGATGCGGTCGCCGCGCTTCACC 226084 Query 41221 ACAAAGTCCACGTCGTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGA 41280 | || |||||||| || ||| | || ||| | ||||| |||||| |||||| Sbjct 226083 TCGAACTCCACGTCCGAGTGGTTGAACAGCACGACGCCCAGGTTGCCACGGTAGTCCTCG 226024 Query 41281 TCGATGACGCCAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCG 41340 || | ||||| || | | |||||| || ||||| ||||| || || || || || Sbjct 226023 TCCACCACGCCGGCTCCCACGTCGATGAAGTTCTTCACGGCCAGACCGGAGCGTGGGGCC 225964 Query 41341 ATCCTACCGTAACAATCTTTGGGCAGCTGCAGAGCAATGTCCGTCTTGATCAGCG----T 41396 | | ||||| | | | ||||| ||| | | ||| ||||| | || || | Sbjct 225963 ACGCGTCCGTAGGAGCCCTCGGGCACCTGGACCTGCAGGTCGGTCTTCA-CAACGGCCTT 225905 Query 41397 GCGGTCGTGGCGCGGAACGATGTAGTCGTAGGCGCTTCTCAGGTCCAATCCGGCGGC 41453 || ||||| || | || | |||||||||||| | |||||||| ||||| || Sbjct 225904 GCC-TCGTGCCG--GCACCACAATGTCGTAGGCGCTGCGCAGGTCCACGCCGGCAGC 225851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450764630876280