Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 246 3e-60
seq4644 131 2e-25
seq4863 109 6e-19
seq4810 104 2e-17
>seq4765
Length=3541379
Score = 246 bits (272), Expect = 3e-60
Identities = 893/1381 (65%), Gaps = 36/1381 (3%)
Strand=Plus/Plus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
|| ||||||||| ||||||||||| | || || || || |||||||| || ||||| ||
Sbjct 3009041 CAGCACATGCTGATGCGCGTGGCGATTGGAATCCATGGTGAAGACATCGATGCCGCTGTG 3009100
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| || ||| | || |||| | || || ||||| ||||||||| |||| |||
Sbjct 3009101 GAGACATACAATTTGTTGTCAGAGCGCTTCTTCACACACGCCTCGCCCACCCTGTTCGCC 3009160
Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743
|| | ||| ||| ||| || | || || || || | || |||||| ||
Sbjct 3009161 GCTGCCACGAACCGGCCGCAGCTCTCGTCCTGCTTCCTCCTGACCATGACATCGGATTCG 3009220
Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGC-GGCGG 7802
||||| ||||||| || || || | || |||| || ||||| | |||| |||||
Sbjct 3009221 ATCGAAGGCATTTTTAAGTCGGTGGAACACTGTGCCATGATCTCCAAGT-CGGCGGGCGG 3009279
Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCAT-CGTGTCCACCAACG 7861
|| || ||||| || | | | || ||||| || | ||| ||| ||| || |
Sbjct 3009280 CATTGGCCTGAATGTCCATTGCATCCGTGCCAAGGGCACTTCCATATGTG-GCACAAATG 3009338
Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921
| | ||| || | | |||||| |||| || ||||| || | || || | || |
Sbjct 3009339 GCACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCAACAATGTGGCTCGGTACGTGG 3009398
Query 7922 ACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978
||||| || || ||||| || ||| |||||||||||||||||| |||||| |||
Sbjct 3009399 ACCAGGGTGGCGGCAAGCGGCCCGGTGCCTTTGCCATCTATTTGGAGCCCTGGCACTCGG 3009458
Query 7979 ACATTTACGCAGTGC-TAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGC 8037
| | | || ||| | | | ||| |||| || || || | || |||
Sbjct 3009459 ATGTCTTCG-AGTTCTTGGAACTGAAAAAGAACACCGGCAAGGAGGAGAATCGTGCTCGC 3009517
Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCA 8097
|||||||||| | | ||| | |||||||| ||||||| |||||| | | | |
Sbjct 3009518 GATCTATTCTATGCCCTCTGGATACCCGATCTCTTTATGAAGCGCGTCGAGGCGAATGAA 3009577
Query 8098 CAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAA 8157
| ||||| || |||||||| | || || | | | || | || |
Sbjct 3009578 AACTGGTCCCTAATGTGCCCGCACAAGTGTCCCGGCCTGCAGGATGTGTGGGGCGACGAG 3009637
Query 8158 TTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCG 8217
||||| | ||||| ||||||| ||| || | | ||| ||| || ||
Sbjct 3009638 TTTGAGAAGCTGTACCTTAAATACGAGGCCGAGGGAAAGGCCAATCGGACAGTTAAGGCT 3009697
Query 8218 CGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTG 8277
| |||| |||||| ||||| || || || || | |||||||||||
Sbjct 3009698 CAGTCCCTGTGGTTCGCCATCATCGAGGCGCAGGTGGAGACTGGCAATCCGTACATGCTC 3009757
Query 8278 TACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGC 8337
| ||| || || |||||| || |||||||| || ||||||||||| ||||||
Sbjct 3009758 TTCAAGGATGCGTGCAACAGGAAGAGCAATCAGCAGAATGTGGGCACCATCAAGTGCAGC 3009817
Query 8338 AATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTA 8397
||||||||| | ||||| || ||||| | |||||||||| | ||||| ||||| ||
Sbjct 3009818 AATCTGTGCACAGAAATCGTCGAGTACTCCTCGCCCGACGAGATCGCCGTCTGCAACCTG 3009877
Query 8398 GCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTC--AAACACTTACGACTTTGAAC 8455
||||| | | | ||| ||| || ||||| | ||| || ||||| ||| |
Sbjct 3009878 GCGTCCATCGCTCTCAACATGTTTGT-----GACGCCCGAAAAGACGTACGATTTTAAGA 3009932
Query 8456 AATTGAAAAACGCCGTGCAAG--TGACGGTACGCAATTTAGATCGCATCATTGATGTCAA 8513
| |||| | | | |||| || | | | ||| | | || ||||| ||||
Sbjct 3009933 AGCTGAAGGAGGTC-ACCAAGACTGTGGCCAAG-AATCTGAACAAGATTATTGACATCAA 3009990
Query 8514 TTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGG 8573
| ||||||| || || || | |||||| ||| | || | ||| ||||| | ||
Sbjct 3009991 CTATTATCCCCTGCCGGAGGCCAGGAAATCGAATATGAGGCATCGCCCCATTGGCATTGG 3010050
Query 8574 CGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGC 8633
||| || || || ||||| || || || || | |||||||||||||| | || ||
Sbjct 3010051 CGTTCAGGGACTCGCCGATGCCTTGATTCTGATGAGATTCCCCTACGAAAGCGAGGAGGC 3010110
Query 8634 GCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTG 8693
| | | || || | | || |||||| | ||||| || || | |||||||| ||
Sbjct 3010111 GGGTCTCCTGAATCAACAGATCTTTGAAACGATATATTATGGAGCCCTGGAAGCCAGTTG 3010170
Query 8694 TCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGG 8753
| |||| |||| | ||| |||| ||| | |||| ||||||||| | ||| ||
Sbjct 3010171 TGAACTGGCCCAGGTCGAAGGCCCGTATGAAACCTACGAGGGCAGCCCCGTGAGCAAGGG 3010230
Query 8754 AATATTGCAATACGACATGTGG---AATGT-CACGCCCACCTCTTTGTGGAATTGGAGCG 8809
||| | || |||||||||||| || || | | | ||||| ||| | |||
Sbjct 3010231 AATCCTCCAGTACGACATGTGGGACAAGGTACCCACGAACCTC----TGGGACTGGGCAA 3010286
Query 8810 ATTTGAAACGCAAAATTGCTC----AATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTAC 8865
| |||| ||| | || || ||| | | || || ||| | ||||| |
Sbjct 3010287 AGCTGAA----GGAATCGATCAAGAAACACGGCGTTAGAAACTCTCTGCTCGTGGCCCCC 3010342
Query 8866 ATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACC 8925
|||||||| || | ||||| || |||||||| |||||||||||||| ||||||| ||||
Sbjct 3010343 ATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAACGAATCCTTCGAGCCGTACACC 3010402
Query 8926 A 8926
|
Sbjct 3010403 A 3010403
Score = 123 bits (136), Expect = 3e-23
Identities = 163/226 (72%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| | ||| | || || ||||| |||||||| ||||| | |||| |
Sbjct 2921409 AGGCGGAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGG 2921468
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| ||||| ||||| |||| |||||||||||| || || || ||||||
Sbjct 2921469 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 2921528
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || ||||| || |||||| || | ||||| |||| ||| || || |||||
Sbjct 2921529 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTG 2921588
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721
||||| || || || | || || ||||| || ||||| |||| ||
Sbjct 2921589 ATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTTGTGTT 2921634
>seq4644
Length=1132839
Score = 131 bits (144), Expect = 2e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
||||||| | ||| || | ||| | ||| || || || ||||| || ||||||||||||
Sbjct 752764 TTCCTCCGCGGAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGG 752705
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| |||| | ||| || ||||| ||||| || || ||||||||||||||||| || |
Sbjct 752704 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 752645
Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664
|||| || || || ||||| ||||| || || || | |||||||| | ||||
Sbjct 752644 GTATTCCCTCCTTGTCTTGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752585
Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
| || ||||| ||||| || || || | || || || || || ||||||
Sbjct 752584 CTTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCATT 752535
Score = 122 bits (134), Expect = 9e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
||||||| | || || | ||| | ||| || ||||| ||||| || ||||||||||||
Sbjct 752308 TTCCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 752249
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| |||| | ||| || ||||| ||||| || || ||||||||||||||||| || |
Sbjct 752248 AGAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAG 752189
Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664
| || || || || || || || || || || || | |||||||| | ||||
Sbjct 752188 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752129
Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
| || | || ||||| || ||||| | ||| || ||||| || ||||||
Sbjct 752128 CCTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCATT 752079
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
||||||| | || || | ||| | ||| || ||||| ||||| || ||||||||||||
Sbjct 751851 TTCCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 751792
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| |||| | ||| || ||||| ||||| || || ||||||||||||||||| || |
Sbjct 751791 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 751732
Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664
| || || || || || || || || || || || | ||||| || | ||| |
Sbjct 751731 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAA 751672
Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715
| || | || ||||| || || || || ||||| || || || |||||||
Sbjct 751671 CCTCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTT 751621
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
||||||| | || || | ||| | || || || || ||||| || ||||||||||||
Sbjct 752536 TTCCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGG 752477
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| |||| | ||| || ||||| ||||| || || ||||||||||||||||| || |
Sbjct 752476 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 752417
Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664
| || || || || || || || || || || || | |||||||| | ||||
Sbjct 752416 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752357
Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
| || | || ||||| || ||||| | || || || || || ||||||
Sbjct 752356 CCTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307
Score = 102 bits (112), Expect = 8e-17
Identities = 162/231 (70%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
||||||| | || || | ||| | ||| || || || ||||| || |||||||||||
Sbjct 752080 TTCCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTG 752021
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| |||| | || || ||||| ||||| || ||||| | |||||||||||| || |
Sbjct 752020 AGAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAG 751961
Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664
| || || || || || || || || || || || | |||||||| | ||||
Sbjct 751960 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 751901
Query 134665 CGTCGAGAGTAATGGTTTTACCG-GTTAAAGTTTTAACGAAAATTTGCATT 134714
| || ||||| ||||| || ||| || | ||| || || || || ||||||
Sbjct 751900 CTTCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCATT 751850
>seq4863
Length=1240122
Score = 109 bits (120), Expect = 6e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| | ||| || || || ||||| || |||||||||||| | ||| |
Sbjct 1064096 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 1064037
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| ||||| ||||| |||| |||||||||||| || || ||||| ||
Sbjct 1064036 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 1063977
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| || | ||||| || | ||||| || || ||
Sbjct 1063976 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTG 1063917
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| | ||||| ||||| || |||||
Sbjct 1063916 ATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879
>seq4810
Length=1195048
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || |||| || | ||| || || || ||||| || |||||||||||
Sbjct 316758 CCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 316699
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || || || ||||| || || ||||| |||| ||||||||| || || ||
Sbjct 316698 AGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316639
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || ||||| || | || ||||| | || ||
Sbjct 316638 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACC 316579
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| || ||||| ||||| || ||||| || |||||
Sbjct 316578 TCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505365921835320
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