Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4765 246 3e-60 seq4644 131 2e-25 seq4863 109 6e-19 seq4810 104 2e-17 >seq4765 Length=3541379 Score = 246 bits (272), Expect = 3e-60 Identities = 893/1381 (65%), Gaps = 36/1381 (3%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || ||||||||| ||||||||||| | || || || || |||||||| || ||||| || Sbjct 3009041 CAGCACATGCTGATGCGCGTGGCGATTGGAATCCATGGTGAAGACATCGATGCCGCTGTG 3009100 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | || |||| | || || ||||| ||||||||| |||| ||| Sbjct 3009101 GAGACATACAATTTGTTGTCAGAGCGCTTCTTCACACACGCCTCGCCCACCCTGTTCGCC 3009160 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || | ||| ||| ||| || | || || || || | || |||||| || Sbjct 3009161 GCTGCCACGAACCGGCCGCAGCTCTCGTCCTGCTTCCTCCTGACCATGACATCGGATTCG 3009220 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGC-GGCGG 7802 ||||| ||||||| || || || | || |||| || ||||| | |||| ||||| Sbjct 3009221 ATCGAAGGCATTTTTAAGTCGGTGGAACACTGTGCCATGATCTCCAAGT-CGGCGGGCGG 3009279 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCAT-CGTGTCCACCAACG 7861 || || ||||| || | | | || ||||| || | ||| ||| ||| || | Sbjct 3009280 CATTGGCCTGAATGTCCATTGCATCCGTGCCAAGGGCACTTCCATATGTG-GCACAAATG 3009338 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | | ||| || | | |||||| |||| || ||||| || | || || | || | Sbjct 3009339 GCACCTCCAATGGCCTCGTTCCCATGCTGCGAGTCTTCAACAATGTGGCTCGGTACGTGG 3009398 Query 7922 ACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 ||||| || || ||||| || ||| |||||||||||||||||| |||||| ||| Sbjct 3009399 ACCAGGGTGGCGGCAAGCGGCCCGGTGCCTTTGCCATCTATTTGGAGCCCTGGCACTCGG 3009458 Query 7979 ACATTTACGCAGTGC-TAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGC 8037 | | | || ||| | | | ||| |||| || || || | || ||| Sbjct 3009459 ATGTCTTCG-AGTTCTTGGAACTGAAAAAGAACACCGGCAAGGAGGAGAATCGTGCTCGC 3009517 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCA 8097 |||||||||| | | ||| | |||||||| ||||||| |||||| | | | | Sbjct 3009518 GATCTATTCTATGCCCTCTGGATACCCGATCTCTTTATGAAGCGCGTCGAGGCGAATGAA 3009577 Query 8098 CAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAA 8157 | ||||| || |||||||| | || || | | | || | || | Sbjct 3009578 AACTGGTCCCTAATGTGCCCGCACAAGTGTCCCGGCCTGCAGGATGTGTGGGGCGACGAG 3009637 Query 8158 TTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCG 8217 ||||| | ||||| ||||||| ||| || | | ||| ||| || || Sbjct 3009638 TTTGAGAAGCTGTACCTTAAATACGAGGCCGAGGGAAAGGCCAATCGGACAGTTAAGGCT 3009697 Query 8218 CGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTG 8277 | |||| |||||| ||||| || || || || | ||||||||||| Sbjct 3009698 CAGTCCCTGTGGTTCGCCATCATCGAGGCGCAGGTGGAGACTGGCAATCCGTACATGCTC 3009757 Query 8278 TACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGC 8337 | ||| || || |||||| || |||||||| || ||||||||||| |||||| Sbjct 3009758 TTCAAGGATGCGTGCAACAGGAAGAGCAATCAGCAGAATGTGGGCACCATCAAGTGCAGC 3009817 Query 8338 AATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTA 8397 ||||||||| | ||||| || ||||| | |||||||||| | ||||| ||||| || Sbjct 3009818 AATCTGTGCACAGAAATCGTCGAGTACTCCTCGCCCGACGAGATCGCCGTCTGCAACCTG 3009877 Query 8398 GCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTC--AAACACTTACGACTTTGAAC 8455 ||||| | | | ||| ||| || ||||| | ||| || ||||| ||| | Sbjct 3009878 GCGTCCATCGCTCTCAACATGTTTGT-----GACGCCCGAAAAGACGTACGATTTTAAGA 3009932 Query 8456 AATTGAAAAACGCCGTGCAAG--TGACGGTACGCAATTTAGATCGCATCATTGATGTCAA 8513 | |||| | | | |||| || | | | ||| | | || ||||| |||| Sbjct 3009933 AGCTGAAGGAGGTC-ACCAAGACTGTGGCCAAG-AATCTGAACAAGATTATTGACATCAA 3009990 Query 8514 TTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGG 8573 | ||||||| || || || | |||||| ||| | || | ||| ||||| | || Sbjct 3009991 CTATTATCCCCTGCCGGAGGCCAGGAAATCGAATATGAGGCATCGCCCCATTGGCATTGG 3010050 Query 8574 CGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGC 8633 ||| || || || ||||| || || || || | |||||||||||||| | || || Sbjct 3010051 CGTTCAGGGACTCGCCGATGCCTTGATTCTGATGAGATTCCCCTACGAAAGCGAGGAGGC 3010110 Query 8634 GCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTG 8693 | | | || || | | || |||||| | ||||| || || | |||||||| || Sbjct 3010111 GGGTCTCCTGAATCAACAGATCTTTGAAACGATATATTATGGAGCCCTGGAAGCCAGTTG 3010170 Query 8694 TCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGG 8753 | |||| |||| | ||| |||| ||| | |||| ||||||||| | ||| || Sbjct 3010171 TGAACTGGCCCAGGTCGAAGGCCCGTATGAAACCTACGAGGGCAGCCCCGTGAGCAAGGG 3010230 Query 8754 AATATTGCAATACGACATGTGG---AATGT-CACGCCCACCTCTTTGTGGAATTGGAGCG 8809 ||| | || |||||||||||| || || | | | ||||| ||| | ||| Sbjct 3010231 AATCCTCCAGTACGACATGTGGGACAAGGTACCCACGAACCTC----TGGGACTGGGCAA 3010286 Query 8810 ATTTGAAACGCAAAATTGCTC----AATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTAC 8865 | |||| ||| | || || ||| | | || || ||| | ||||| | Sbjct 3010287 AGCTGAA----GGAATCGATCAAGAAACACGGCGTTAGAAACTCTCTGCTCGTGGCCCCC 3010342 Query 8866 ATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACC 8925 |||||||| || | ||||| || |||||||| |||||||||||||| ||||||| |||| Sbjct 3010343 ATGCCCACGGCATCCACTGCCCAGATAATGGGCAACAACGAATCCTTCGAGCCGTACACC 3010402 Query 8926 A 8926 | Sbjct 3010403 A 3010403 Score = 123 bits (136), Expect = 3e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | || || ||||| |||||||| ||||| | |||| | Sbjct 2921409 AGGCGGAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGG 2921468 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| |||||||||||| || || || |||||| Sbjct 2921469 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 2921528 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| || | ||||| |||| ||| || || ||||| Sbjct 2921529 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTG 2921588 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 ||||| || || || | || || ||||| || ||||| |||| || Sbjct 2921589 ATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTTGTGTT 2921634 >seq4644 Length=1132839 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | ||| || | ||| | ||| || || || ||||| || |||||||||||| Sbjct 752764 TTCCTCCGCGGAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGG 752705 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || ||||| ||||| || || ||||||||||||||||| || | Sbjct 752704 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 752645 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 |||| || || || ||||| ||||| || || || | |||||||| | |||| Sbjct 752644 GTATTCCCTCCTTGTCTTGGATTTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752585 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| ||||| || || || | || || || || || |||||| Sbjct 752584 CTTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCATT 752535 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || || | ||| | ||| || ||||| ||||| || |||||||||||| Sbjct 752308 TTCCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 752249 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || ||||| ||||| || || ||||||||||||||||| || | Sbjct 752248 AGAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGAG 752189 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || || || || | |||||||| | |||| Sbjct 752188 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752129 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | || ||||| || ||||| | ||| || ||||| || |||||| Sbjct 752128 CCTCCAAGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAGATCTGCATT 752079 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || || | ||| | ||| || ||||| ||||| || |||||||||||| Sbjct 751851 TTCCTCCGCGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 751792 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || ||||| ||||| || || ||||||||||||||||| || | Sbjct 751791 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 751732 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || || || || | ||||| || | ||| | Sbjct 751731 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGTTCAA 751672 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 | || | || ||||| || || || || ||||| || || || ||||||| Sbjct 751671 CCTCCAAGGTGATGGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTT 751621 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || || | ||| | || || || || ||||| || |||||||||||| Sbjct 752536 TTCCTCCGCGCAGACGGAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGG 752477 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || ||||| ||||| || || ||||||||||||||||| || | Sbjct 752476 AGAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 752417 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || || || || | |||||||| | |||| Sbjct 752416 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 752357 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | || ||||| || ||||| | || || || || || |||||| Sbjct 752356 CCTCCAAGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 752307 Score = 102 bits (112), Expect = 8e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || || | ||| | ||| || || || ||||| || ||||||||||| Sbjct 752080 TTCCTCCGCGCAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTG 752021 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || ||||| ||||| || ||||| | |||||||||||| || | Sbjct 752020 AGAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCTGGAG 751961 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || || || || | |||||||| | |||| Sbjct 751960 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCA 751901 Query 134665 CGTCGAGAGTAATGGTTTTACCG-GTTAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| ||||| || ||| || | ||| || || || || |||||| Sbjct 751900 CTTCCAGAGTGATGGTCTTTCCGAGTAAGAGTCTTCACAAAGATCTGCATT 751850 >seq4863 Length=1240122 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| || |||||||||||| | ||| | Sbjct 1064096 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 1064037 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| |||||||||||| || || ||||| || Sbjct 1064036 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 1063977 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | ||||| || | ||||| || || || Sbjct 1063976 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAGGGTG 1063917 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | ||||| ||||| || ||||| Sbjct 1063916 ATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1063879 >seq4810 Length=1195048 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| || | ||| || || || ||||| || ||||||||||| Sbjct 316758 CCTCCGCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 316699 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| || || ||||| |||| ||||||||| || || || Sbjct 316698 AGAGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 316639 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | || ||||| | || || Sbjct 316638 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGCTCGACC 316579 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| ||||| || ||||| || ||||| Sbjct 316578 TCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 316532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505365921835320