Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4765 289 4e-73 >seq4765 Length=3541379 Score = 289 bits (320), Expect = 4e-73 Identities = 1197/1866 (64%), Gaps = 38/1866 (2%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || ||||| |||| || || || || || || || || ||||| |||||||| || Sbjct 3010791 GTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTTTTAAGG 3010732 Query 68434 CCTAGACT-CCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTAT 68492 || || || ||| ||| || || || ||| || ||| ||| | || || || | Sbjct 3010731 CC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGGGCTCAGCCAC 3010673 Query 68493 ATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTAT 68552 |||||| || | ||||||||| |||||||| || || || | |||||| |||||||| || Sbjct 3010672 ATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCATTTTAAT 3010613 Query 68553 AATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCAT-CTGG-- 68609 | || || || ||||||| ||||| | | | | | | ||| |||| Sbjct 3010612 GGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACA---GATCGCGAACATTCTGGGG 3010556 Query 68610 -AAGGC-TCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATC 68666 | ||| ||| |||| || || || |||| ||| || || ||||| || ||||| Sbjct 3010555 AATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTCATGTCATC 3010496 Query 68667 ATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTC 68726 || |||||| | ||| |||| | | | | || || | || || | || ||||| Sbjct 3010495 ATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACCTGGAATTC 3010436 Query 68727 CCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATT 68786 || || | || | || || || ||||| |||| || || || | ||||| || || Sbjct 3010435 GCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTT 3010376 Query 68787 TCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 68846 |||| || || ||||| ||||| || ||||| || ||||| | | | ||||||| Sbjct 3010375 GCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAAC 3010316 Query 68847 ACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAAC 68906 || ||| | |||| || || || | | ||| ||||| || | | ||||| Sbjct 3010315 GCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGTACCTT 3010256 Query 68907 ATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATA 68966 | ||| | ||||| || || ||||| || || | || | || |||||||| Sbjct 3010255 GTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATA 3010196 Query 68967 AGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026 || ||||| | || ||||||||||| || || | || || ||||| || ||||| Sbjct 3010195 CGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTC 3010136 Query 69027 GAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT-AAAA 69082 || |||| | ||| |||| | || || || ||| | || ||| | | | Sbjct 3010135 AAAGATCTGTTGATTCAGGAGACC---CGCCTCCTCGCTTTCGTA-GGGGAATCTCATCA 3010080 Query 69083 GAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTG 69142 |||| || ||||| || | ||||||||| ||||| || || || | ||| ||| |||| | Sbjct 3010079 GAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATATTCG 3010020 Query 69143 AACTTTC--AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 | |||| || || || | |||||||| || || || ||||| || || ||||| Sbjct 3010019 A--TTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGATTCTT 3009962 Query 69201 GACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC----CATCTATAA 69256 | | || || || ||||| || || |||||| | |||| | | | Sbjct 3009961 GGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTA-CGTCTTTTCGGGCGTCA 3009903 Query 69257 CAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCAT 69316 ||||||| || || || | || || || || || || || | ||| | | | | Sbjct 3009902 CAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGT 3009843 Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376 | | | || ||||| || ||||| || || ||||| || |||| ||| |||||||| | Sbjct 3009842 ACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGC 3009783 Query 69377 TCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436 |||| |||| || || |||||| | || || ||||| | ||||| || | ||| | | Sbjct 3009782 TCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCT 3009723 Query 69437 CGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCTT 69493 |||| || | ||| | | | ||| | | || ||| | ||| ||| Sbjct 3009722 CGATGATGGCGAACCACAGGGACTGAGCCT---TAACTGTCCGATTGGCCTTTCCCTCGG 3009666 Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553 || |||| || ||| || || || || ||||| ||||| | || || |||| Sbjct 3009665 CCTCGTATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGAC 3009606 Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGAT 69613 | | | || ||||| | ||||| |||| ||| || || |||||||| |||| Sbjct 3009605 ACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGAT 3009546 Query 69614 CGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttt 69672 |||| ||||| || || ||| || ||||| | | | ||| || || || || || || Sbjct 3009545 CGGGTATCCAGAGGGC-ATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTC 3009487 Query 69673 tttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732 ||||| || || | ||||| | | ||| || ||||| || || | ||| || || | | Sbjct 3009486 TTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAG 3009427 Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792 | || || || || || ||||| || | ||| | || || || |||||| | Sbjct 3009426 GCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGC 3009367 Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852 ||||| |||| | ||||| || | |||||||| ||| | || || | || | || Sbjct 3009366 AGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCA 3009307 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 || || | | | || || || || || ||| || ||||| | ||||| || Sbjct 3009306 CGGATGCAATGGACATTCAGGCCAATGCCGCCCGCCGACTTGGAGATCATGGCACAGTGT 3009247 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 | || | | | | || || || || ||| | ||||| | || || || ||| Sbjct 3009246 TCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGGAC 3009187 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 || | || | | | || | || || | || || || ||||| ||||| | Sbjct 3009186 GAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTGTGTGAAGAAG 3009127 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCC 70091 || || | || ||||||||| || | ||| | || || || ||| ||| ||||| Sbjct 3009126 CGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTTCAC-CATGGATTCC 3009068 Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAA 70151 ||||| || ||||||| ||| ||||| || || || | | ||| ||| | |||| Sbjct 3009067 AATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTACCGTTTCTCTTCAG 3009008 Query 70152 CAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 70211 || || || ||||| || || || ||||| || || || |||||| | ||||| Sbjct 3009007 CAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAAAGTCGCGATCGTA 3008948 Query 70212 AATAAT 70217 ||| || Sbjct 3008947 AATTAT 3008942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686864657523240