Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04]
5,141 sequences; 164,292,578 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq4765 289 4e-73
>seq4765
Length=3541379
Score = 289 bits (320), Expect = 4e-73
Identities = 1197/1866 (64%), Gaps = 38/1866 (2%)
Strand=Plus/Minus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| ||||| |||| || || || || || || || || ||||| |||||||| ||
Sbjct 3010791 GTGAACTGTATGGCATTGGCAGCCGGCTTCGTGCGGAGGTAATACATCCCGGTTTTAAGG 3010732
Query 68434 CCTAGACT-CCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTAT 68492
|| || || ||| ||| || || || ||| || ||| ||| | || || || |
Sbjct 3010731 CC-AGCCTTCCACGAGTAAAAGTGTATGGATGTCAGCTTGCCATAGTTGGGCTCAGCCAC 3010673
Query 68493 ATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTAT 68552
|||||| || | ||||||||| |||||||| || || || | |||||| |||||||| ||
Sbjct 3010672 ATGAATGTTGAACGATTGACTCTGATCGATAAACGCACCGCGATCTGCGGCCATTTTAAT 3010613
Query 68553 AATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCAT-CTGG-- 68609
| || || || ||||||| ||||| | | | | | | ||| ||||
Sbjct 3010612 GGTGGATTTCACAGAGATCTCCCAAACCGTCTTGTACA---GATCGCGAACATTCTGGGG 3010556
Query 68610 -AAGGC-TCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATC 68666
| ||| ||| |||| || || || |||| ||| || || ||||| || |||||
Sbjct 3010555 AATGGCCTCGATATTCTGGATAGAGCCACGGCTGGAAATGATCTGGTTCTTCATGTCATC 3010496
Query 68667 ATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTC 68726
|| |||||| | ||| |||| | | | | || || | || || | || |||||
Sbjct 3010495 ATCCCACAAGTCCAGCTCAGTTAGATCCCGCAATAGGTGATGGTTGACCACCTGGAATTC 3010436
Query 68727 CCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATT 68786
|| || | || | || || || ||||| |||| || || || | ||||| || ||
Sbjct 3010435 GCCGGAGAGAACGCGGCGTGTATAGATATTCGTGGTGTACGGCTCGAAGGATTCGTTGTT 3010376
Query 68787 TCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 68846
|||| || || ||||| ||||| || ||||| || ||||| | | | |||||||
Sbjct 3010375 GCCCATTATCTGGGCAGTGGATGCCGTGGGCATGGGGGCCACGAGCAGAGAGTTTCTAAC 3010316
Query 68847 ACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAAC 68906
|| ||| | |||| || || || | | ||| ||||| || | | |||||
Sbjct 3010315 GCCGTGTTTCTTGATCGATTCCTTCAGCTTTGCCCAGTCCCAGAGGTTCGTGGGTACCTT 3010256
Query 68907 ATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATA 68966
| ||| | ||||| || || ||||| || || | || | || ||||||||
Sbjct 3010255 GTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATA 3010196
Query 68967 AGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026
|| ||||| | || ||||||||||| || || | || || ||||| || |||||
Sbjct 3010195 CGGGCCTTCGACCTGGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATATATCGTTTC 3010136
Query 69027 GAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT-AAAA 69082
|| |||| | ||| |||| | || || || ||| | || ||| | | |
Sbjct 3010135 AAAGATCTGTTGATTCAGGAGACC---CGCCTCCTCGCTTTCGTA-GGGGAATCTCATCA 3010080
Query 69083 GAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTG 69142
|||| || ||||| || | ||||||||| ||||| || || || | ||| ||| |||| |
Sbjct 3010079 GAATCAAGGCATCGGCGAGTCCCTGAACGCCAATGCCAATGGGGCGATGCCTCATATTCG 3010020
Query 69143 AACTTTC--AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200
| |||| || || || | |||||||| || || || ||||| || || |||||
Sbjct 3010019 A--TTTCCTGGCCTCCGGCAGGGGATAATAGTTGATGTCAATAATCTTGTTCAGATTCTT 3009962
Query 69201 GACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC----CATCTATAA 69256
| | || || || ||||| || || |||||| | |||| | | |
Sbjct 3009961 GGCCACAGTCTTGGTGACCTCCTTCAGCTTCTTAAAATCGTA-CGTCTTTTCGGGCGTCA 3009903
Query 69257 CAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCAT 69316
||||||| || || || | || || || || || || || | ||| | | | |
Sbjct 3009902 CAAACATGTTGAGAGCGATGGACGCCAGGTTGCAGACGGCGATCTCGTCGGGCGAGGAGT 3009843
Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376
| | | || ||||| || ||||| || || ||||| || |||| ||| |||||||| |
Sbjct 3009842 ACTCGACGATTTCTGTGCACAGATTGCTGCACTTGATGGTGCCCACATTCTGCTGATTGC 3009783
Query 69377 TCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436
|||| |||| || || |||||| | || || ||||| | ||||| || | ||| | |
Sbjct 3009782 TCTTCCTGTTGCACGCATCCTTGAAGAGCATGTACGGATTGCCAGTCTCCACCTGCGCCT 3009723
Query 69437 CGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCTT 69493
|||| || | ||| | | | ||| | | || ||| | ||| |||
Sbjct 3009722 CGATGATGGCGAACCACAGGGACTGAGCCT---TAACTGTCCGATTGGCCTTTCCCTCGG 3009666
Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553
|| |||| || ||| || || || || ||||| ||||| | || || ||||
Sbjct 3009665 CCTCGTATTTAAGGTACAGCTTCTCAAACTCGTCGCCCCACACATCCTGCAGGCCGGGAC 3009606
Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGAT 69613
| | | || ||||| | ||||| |||| ||| || || |||||||| ||||
Sbjct 3009605 ACTTGTGCGGGCACATTAGGGACCAGTTTTCATTCGCCTCGACGCGCTTCATAAAGAGAT 3009546
Query 69614 CGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttt 69672
|||| ||||| || || ||| || ||||| | | | ||| || || || || || ||
Sbjct 3009545 CGGGTATCCAGAGGGC-ATAGAATAGATCGCGAGCACGATTCTCCTCCTTGCCGGTGTTC 3009487
Query 69673 tttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732
||||| || || | ||||| | | ||| || ||||| || || | ||| || || | |
Sbjct 3009486 TTTTTCAGTTCCAAGAACTCGAAGACATCCGAGTGCCAGGGCTCCAAATAGATGGCAAAG 3009427
Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792
| || || || || || ||||| || | ||| | || || || |||||| |
Sbjct 3009426 GCACCGGGCCGCTTGCCGCCACCCTGGTCCACGTACCGAGCCACATTGTTGAAGACTCGC 3009367
Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852
||||| |||| | ||||| || | |||||||| ||| | || || | || | ||
Sbjct 3009366 AGCATGGGAACGAGGCCATTGGAGGTGCCATTTGTGCCACATATGGAAGTGCCCTTGGCA 3009307
Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912
|| || | | | || || || || || ||| || ||||| | ||||| ||
Sbjct 3009306 CGGATGCAATGGACATTCAGGCCAATGCCGCCCGCCGACTTGGAGATCATGGCACAGTGT 3009247
Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
| || | | | | || || || || ||| | ||||| | || || || |||
Sbjct 3009246 TCCACCGACTTAAAAATGCCTTCGATCGAATCCGATGTCATGGTCAGGAGGAAGCAGGAC 3009187
Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032
|| | || | | | || | || || | || || || ||||| ||||| |
Sbjct 3009186 GAGAGCTGCGGCCGGTTCGTGGCAGCGGCGAACAGGGTGGGCGAGGCGTGTGTGAAGAAG 3009127
Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCC 70091
|| || | || ||||||||| || | ||| | || || || ||| ||| |||||
Sbjct 3009126 CGCTCTGACAACAAATTGTATGTCTCCACAGCGGCATCGATGTCTTCAC-CATGGATTCC 3009068
Query 70092 TATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAA 70151
||||| || ||||||| ||| ||||| || || || | | ||| ||| | ||||
Sbjct 3009067 AATCGCCACGCGCATCAGCATGTGCTGCGGCCGCTCGGCAATCTTACCGTTTCTCTTCAG 3009008
Query 70152 CAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 70211
|| || || ||||| || || || ||||| || || || |||||| | |||||
Sbjct 3009007 CAAATACGAACGCTCCAGGGTCTTGAAACCAAAGTAATTATACCCAAAGTCGCGATCGTA 3008948
Query 70212 AATAAT 70217
||| ||
Sbjct 3008947 AATTAT 3008942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686864657523240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |