Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20kikkawai_20[refseq_20GCF_5F000224215.1_202013-03-04] 5,141 sequences; 164,292,578 total letters Query= NC_027335.1 Length=145518 Score E Sequences producing significant alignments: (Bits) Value seq4953 320 2e-82 seq16 104 2e-17 seq5094 91.5 1e-13 >seq4953 Length=802672 Score = 320 bits (354), Expect = 2e-82 Identities = 1622/2559 (63%), Gaps = 87/2559 (3%) Strand=Plus/Plus Query 107067 AATCTTTCAAACCTAAGAGCTCTTGGAGACCCTATTAAGGGGATTGAGGGAGCAGGTAGC 107126 |||||||| |||||||||||| ||| || || ||||| ||| | ||||||| || Sbjct 185432 AATCTTTCTAACCTAAGAGCTGCTGGTGATCCCATTAAACACATTCAAGGAGCAGCCAGT 185491 Query 107127 GGTGTTGTTCCTGTTATGAAAATGCTAGAAGACGGTTTCCGGTACGCAAATCAGTTAGGG 107186 |||||| |||| || ||||| | |||||||| ||||| || | || || |||| Sbjct 185492 GGTGTTCTTCCAGTAATGAAGTTACTAGAAGATAGTTTCACCTATTCCAACCAACTAGGC 185551 Query 107187 CAAAGACAAGGTGCAGGCGCAGTCTATCTAAATGTTTTCCATGCGGATATTATGGACTTT 107246 |||||| | ||||| || | || ||||| | |||||||||| | || || || | || Sbjct 185552 CAAAGAAACGGTGCTGGGGTTGTTTATCTTAGTGTTTTCCATCCTGACATCATTCAATTC 185611 Query 107247 TTATCAACTAGAAAAGAAAATGCAGAATCCGCAAA---GCAAATCAAAACACTTTCTTTG 107303 || | || ||| ||||| || || || ||| | | | || || ||||| | Sbjct 185612 TTGGGAGTTAAAAAGGAAAACGCCGA---CGAAAAAATCCGAGTAAACACCCTTTCACTT 185668 Query 107304 GGAGTAGTTGTTCCCGATAAATTTTATGAGCTAGCTGAGTCTGGGGATGTAATTCACTTA 107363 || || ||||| || ||||||||||||||||| ||| | || |||| || || || Sbjct 185669 GGTGTGGTTGTGCCAGATAAATTTTATGAGCTCGCTAAAAATGATGATGATATGTACCTA 185728 Query 107364 TTTTCTCCATATGATGTTGCTAAAGAATACGGTGTACCATTCTCATTTGTAGACATTGAT 107423 || |||||||||||||| || || || || || ||||||| ||| || ||| | Sbjct 185729 TTCAGTCCATATGATGTTGAACGTGAGTATGGAGTTCCCTTCTCATATGTTGATATTTCT 185788 Query 107424 TCAGAATACAATAACATGATTCAGAACCCAAATATCAGAAGTAAGGTAATGAAT---GCA 107480 ||||||| | || ||| | ||||| || | || |||| || || | || Sbjct 185789 AAAGAATACGACAATATGGTCAAGAAC---AAGAACATTTCTAAGAAAAAGATTCGAGCT 185845 Query 107481 CGAGATTTGGAAGAAGAAATTAGCCGTTTACAACAAGAGTCAGGTTACCCATATATTATG 107540 || || | ||| ||||| | |||||||||| || || || ||||| ||||| Sbjct 185846 CGTGAACTTGAAACCGAAATCGGAAAACTACAACAAGAATCTGGCTATCCATACATTATC 185905 Query 107541 AATGTTAGTACTGTAAATAAAGCCAATCCTATTGATGGCAAAATCATTATGAGTAATTTA 107600 || || || || || | ||||| |||| ||||| || | ||||||||| | Sbjct 185906 AACATTGACACCGTTAACCGTGATAATCCGGTTGACGGCAAGATTGTCATGAGTAATCTG 185965 Query 107601 TGCAGTGAAATATTACAGGTACAGACACCATCTAAGCTAAATGATGAACAAGTATACGAA 107660 || | ||||| | ||||| |||||||| || | | | ||||||||| |||||| Sbjct 185966 TGTACCGAAATTCTCCAGGTTCAGACACCTTCCATCGTTGACGATGAACAAAACTACGAA 186025 Query 107661 GAGTTAGGTACAGACATTAGCTGTAATTTAGGTTCAATTAACATCCTTAACTTGTTAGAA 107720 ||||||| || || | |||||| | || || | |||| | | ||| | | | Sbjct 186026 CAGTTAGGAACCGATGTCTCATGTAATCTGGGCTCTACTAACGTAGTGAACCTCATGG-- 186083 Query 107721 ACATCTAATGATGTAGTGGCATCAATTGAGACGATGGTAAGAGCTCTAACATATATTACA 107780 |||| || | | |||| |||| | ||||| | ||||||||| | |||| Sbjct 186084 -CATCACCAGACTTCGGTAAATCAGTTGAAGCCATGGTGAAAGCTCTAACCTTCGTTACC 186142 Query 107781 GATGTGTCAAATATAAAAGCAGTACCTACTATCAAGAATGGTAATGATAAAGCCCATACA 107840 ||| ||| || || | || || | | || | || ||||| | || || Sbjct 186143 GATCACTCATCAATTAACGTGGTTCCATCAGTTAAACACGGAAATGAACTAAGTCACTCA 186202 Query 107841 ATTGGTTTAGGGGCAATGGGGCTACATGCGTGGTTCGCAAGTAACCAAGTAGAATATGGC 107900 |||||||| || || ||||| || ||| | | || || | || || | | |||||| Sbjct 186203 ATTGGTTTGGGAGCCATGGGTCTTCATTCATATTTTGCTAAAAATCATATGTACTATGGC 186262 Query 107901 TCACCTGAATCTATTGAAATGACGGATGCC--CTGTTTGAATTAATTAACTATGCTACTT 107958 |||||||| || |||||| | || | || || | || || | ||||| || Sbjct 186263 TCACCTGAGTCCATTGAATTTACCAGTACCTACTTTATGCTTT--TAAACTACTGGACCC 186320 Query 107959 TGGTGGCAAGTAACAAGATTGCTAAAGAGCGTGGCACAACATTCCATAACTTTGAGAACT 108018 || ||| ||| | || ||||| || || || | | |||||||| || || || Sbjct 186321 TGAAGGCTTCTAATCAAATGGCTAAGGATCGCGGAAAAGTTTTCCATAATTTCGAAAAAA 186380 Query 108019 CTAAATACGCAGACGGTTCTTACTTTGATGAATA-TGTACCAACACTAAATCAGGAAATC 108077 |||||| || || || ||||| || ||| | || |||||| | | | ||| Sbjct 186381 GTAAATATGCTGATGGATCTTATTTCGATCAGTACACTACCAAGAGTTGGGCTCCAAA-G 186439 Query 108078 TCTAGTAAGGTGGCGGAAGTATTTGATGGAGTGGTACTACCTAATGTAAAAGATTGGGAA 108137 || ||| || | | |||||||| || | | || | | |||||| ||| | Sbjct 186440 TCAGATAAAGTAAAATCACTGTTTGATGGCGTCTTTATTCCAACCGAAAAAGACTGGAAC 186499 Query 108138 ACATTAAGAAACAGT--ATTATTGAAGGTGGTCTATACCATCAAAACCGTTTAGCTGTGG 108195 | ||| ||||| | | || || |||||| |||||||| || || | || || | Sbjct 186500 GCTTTA--AAACAATCAGTCATGGAGTATGGTCTCTACCATCAGAATCGCATGGCCGTAG 186557 Query 108196 CTCCAAATGGTAGTATTGCTTATGTTAATGAGACTACTTCTTCATTGCACCCAATTATCT 108255 |||| |||||| | |||||| || || | || | ||||| || ||| | Sbjct 186558 CTCCTAATGGTTCAACTGCTTACATTGGGGATGCAACAGCAAGTTTGCATCCGATTGTTC 186617 Query 108256 CTATGATTGAAGAACGTCAAGATGGGAAAACAGGTAAAACTTATTACCCTGCACCCCGGT 108315 | ||||||| ||| ||||| || | || | | ||| ||||| || || Sbjct 186618 AAAAAATTGAAGCACGCCAAGAATCAAAGATTGGAACCATTTACTACCCGGCTCCATACC 186677 Query 108316 TATCTGAGAAGACAATTCCATATTACAAGTCAGCGTACAATACAAGTATGATTGACGTAA 108375 | || | | || ||||| || || | ||||| || | || ||| | | |||| Sbjct 186678 TTTCAAATGACACCATTCCTTACTATGAATCAGCCTATGACACTGACATGCGTAAAGTAA 186737 Query 108376 TCAACGTGTACGCAACAGCACAAAAACATATTGACCAAGGTATGAGTTTAACATTGTTTA 108435 | | || ||||| | || ||||| || |||| ||||| ||||||||||| | |||| Sbjct 186738 TTGATGTTTACGCTGCCGCTCAAAAGCACGTTGATCAAGGAATGAGTTTAACCCTCTTTA 186797 Query 108436 TGCGCTCAGAGTTACCAGAAAATCTTTATCCTTGG-AAGGTGG-AG-GGTGGCGCTACAT 108492 |||| ||| | ||| | ||||||| ||| ||| ||| || ||| | | | Sbjct 186798 TGCGTTCAACCATTCCAAAGGGTCTTTATGAATGGAAAGATGGTAGAAGTGACAAAATGT 186857 Query 108493 CCACTCGGGACTTAACTTTATTAAGACATTATGCATGGAAAAAAGGTATAAAAACAATTT 108552 | || | || ||||| | | || ||||||| | |||||||| || ||| || | | Sbjct 186858 CAACCAGAGATTTAACGATCCTTCGAAATTATGCTTACAAAAAAGGCATTAAATCACTCT 186917 Query 108553 ATTATGTTAGAACATTCACCGAAGAAGACGGAAGCGAAGTAGGGGTTTCAGAGTGTGAAA 108612 |||| || |||| || || || || | | ||||| || | || ||||||| Sbjct 186918 ATTACGTGCGAACCTTTACTGACGATAA---TACTGAAGTTGGTGCCAATGAATGTGAAA 186974 Query 108613 GTTGTACAATTTA------AGGAG-----ATGAGCACATGAAT------TT-----GCAA 108650 | || |||||| ||||| | | |||| ||| || | || Sbjct 186975 GCTGCGTAATTTAATCCTTAGGAGGAAATACATGGACATTAATAAAGTCTTAACCGGAAA 187034 Query 108651 G--AAAAG-----TATGAAGGAATTAACTGGAATAAGATTGATGATGTAATTGACCAAGC 108703 | ||||| || ||| |||||||||||| |||||||||| ||||||| |||| Sbjct 187035 GTCAAAAGGAAACTACAAAGCGATTAACTGGAATTCTATTGATGATGAAATTGACAAAGC 187094 Query 108704 CACATGGAAAAAGCTTACTGAGCAATTTTGGTTGGACACACGTGTCCCTGTAGGTAACGA 108763 || ||| |||| | || ||||| || ||| | || || | | || || ||||| Sbjct 187095 TACCTGGGAAAAATTAACCGAGCAGTTCTGGCTTGATACTAGAATTCCACTATCAAACGA 187154 Query 108764 TGTTAATGATTGGGCAAAGCTCTC-TGATATGGAGCA-AGAT--TTAATAAATAAAGTGT 108819 | | || || ||| | || | |||| || || | || | | | | || | Sbjct 187155 TCTAAAGGACTGG----CGTTCACTTGATGATGATCACAAATGGATTGTTGGTCACGTCT 187210 Query 108820 TTGGTGGGTTAACATTACTAGACACAGTTCAATCAGAATCGGGGGTACACTCACTACTTG 108879 |||| |||||||| ||||| || || |||| || || || | | || | Sbjct 187211 TTGGGGGGTTAACTTTACTGGATACCCTTCAGTCTCAAGACGGAATGGCAGCCCTTCGAA 187270 Query 108880 ATGATGTAAGAACACAGCATGAAGAAGCTGTTTTAAATAACATAGCCTTTATGGAAGCAG 108939 | |||| ||| || |||||| || |||||||||||||| ||||||||| ||| Sbjct 187271 AAGATGCGGTAACGCAACATGAAATTGCGGTTTTAAATAACATTCAGTTTATGGAATCAG 187330 Query 108940 TACACGCTAAAAGTTATTCAACAATTTTTAGCACATTTAATACACCTACAGAGATTGACA 108999 |||| ||||| ||||| || |||| ||| || || || || ||| || ||||| Sbjct 187331 TACATGCTAAGAGTTACTCTTCAATCTTTTCGACTTTGAACACCCCTGATGAAATTGATG 187390 Query 109000 ATATCTTTGAATGGGTAGCTACAAATAAACGTTTACAATATAAAGCTAACA----TTATT 109055 | |||||| | ||| | ||| | || | | ||| | ||| | || | |||| Sbjct 187391 AGATCTTTCATTGGAGTGACACAGAAGAATTTCTTCAAAACAAAACCAAAAAAATCTATT 187450 Query 109056 AACGATATTTATCGAAACGGTACA-CCACTACAGAAAAAGAGTGCATCCGTACTGTTGGA 109114 || ||| ||| | ||| ||||| | || || | | || || | | || Sbjct 187451 CAC--TATACCACGATGATGGACATCCACTTAAAAAGAAAATTTCAAGTGTCTTTCTTGA 187508 Query 109115 GAGCTTCCTATTTTACTCAGGTTTTTACACACCACTACGCTATTTAGGTGAGGCAAAAAT 109174 | || || || || || || || || || || | | ||| | ||| | || | Sbjct 187509 AACATTTCTTTTCTATTCTGGATTCTATACCCCTATTTGGTATCTTGGTCATAACGAACT 187568 Query 109175 GGTTAATACAGCCGAAATTATTAAATTAATTATTCGTGACGAGTCTGTACATGGAACCTA 109234 || || || || || || || |||||||||||||| || || |||||||| || Sbjct 187569 TCCAAACGTTGCTGAGATCATCAAGTTGATTATTCGTGACGAATCCGTTCATGGAACTTA 187628 Query 109235 TATCGGCTATAAATACCAGTTAGGGTTTAACCAGTTACCAGAAACTGAACAAAAAGAAAT 109294 || || ||||||| ||| | ||| || || ||| ||||| |||||||| || | Sbjct 187629 CATTGGTTATAAATTCCAAGTTCAGTTCAATCAATTAGGAGAAAACGAACAAAACGACTT 187688 Query 109295 GGAACAATGGGT-----AATTGATTTAGCATTTAAATTATGGGAGAACGAAACACAGTAT 109349 || | ||| | | || | || || | |||| | |||||| | ||||| Sbjct 187689 AAAAGATTGGATGTATAACTTTTTGTACGATCT---TTAT--CAAAACGAAGAAAAGTAT 187743 Query 109350 ACTGCTGAACTATATAGTGAGATTGGTTGGACAAAAGATGTTAATACATTTTTGGAGTAC 109409 ||| | || || | | | || ||||| | || ||| || || | ||| Sbjct 187744 ACTCATCTGCTTTACGATCAAGTAGGGTGGACTGACGACGTTTTAACCTTCATTCGTTAC 187803 Query 109410 AATTTAAATAAAGCTCTAGCTAACTTAGG-GATGAACCCTTTATTCCCAACAACAAGTGC 109468 ||| || ||||| || || |||| | || || | | ||| ||| || | Sbjct 187804 AATGCCAACAAAGCATTAATGAATCTAGGACAGGATCCAATGTTCCCCGACACTGAG-GA 187862 Query 109469 AGACGTAAACCCTATTGTAATGAATGGTATCTCTACAACAACTAGTAACCATGACTTCTT 109528 ||| || || || ||||| ||||| || || || || |||| ||||||||||||||| Sbjct 187863 AGATGTTAATCCAATTGTTATGAACGGAATTTCAACGGCAACGGTTAACCATGACTTCTT 187922 Query 109529 CTCTCAGGTAGGTAATGGGTACTTACTAGGTAAAGTAGA 109567 ||| || || ||||| || ||| ||||| || ||||| Sbjct 187923 CTCACAAGTGGGTAACGGTTACCGTCTAGGAAACGTAGA 187961 >seq16 Length=193047 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 89507 ATTTTAGTACCAACCATTTGCTAACCAGAAAGATTTTGCGTTCTCCCATGAGCCATAGCG 89566 || |||||||||||| | || | |||||| |||| ||| |||||| ||||| || Sbjct 173920 ATCTTAGTACCAACCGTGTGATTGCCAGAATGATTGTGCACCACTCCATGAACCATAACG 173979 Query 89567 ACCTGCTACATACTCATCAGCTACTCGTTCTTGGTTGGCAGGTGAATAGTCACCATTTAA 89626 | ||| || | | ||| |||| |||||||| || ||||||||||||||||||| Sbjct 173980 TGAAGTTACGTATTGGTTAGCAACTCTATCTTGGTTAGCTTGTGAATAGTCACCATTTAA 174039 Query 89627 ATAAGAGGCAGATAATTGGTAACGACCAATATACTGACCATTTGTTGCATCATAAGAACC 89686 || || |||||||||||| ||| || | |||||||| ||| || || || Sbjct 174040 GTATGACTTAGATAATTGGTACTTACCGTAGTAGTTACCATTTGAAGCAGTGTATGAGCC 174099 Query 89687 ACTAGATTCACGTTGTGCAATCCACTCTTTTGCTG 89721 || ||||||||| | ||||| |||| |||| Sbjct 174100 ACCTGATTCACGTGAAGTGATCCAAGCTTTGGCTG 174134 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 89585 AGCTACTCGTTCTTGGTTGGCAGGTGAATAGTCACCATTTAAATAAGAGGCAGATAATTG 89644 |||||| ||||||||||| || || || |||||||||||||| || || | ||||||||| Sbjct 100401 AGCTACCCGTTCTTGGTTAGCTGGAGAGTAGTCACCATTTAAGTATGATGAAGATAATTG 100460 Query 89645 GTAACGACCAATATACTGACCATTTGTTGCATCATAAGAACCACTAGATTCACGTTGTGC 89704 ||| |||||| |||||||||||| | ||| || || || |||||| |||||| Sbjct 100461 GTATTTACCAATGTACTGACCATTTCTGGCACTGTATGAGTTACCAGATTCCACTTGTGC 100520 Query 89705 AAT 89707 || Sbjct 100521 GAT 100523 >seq5094 Length=366253 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 102473 GGACGTTTAGCTCAGTTGGTCAGAGCATTCGGCTCATAACCGAACGGTCGCAGGTTCGAG 102532 |||| ||||||||||||||| |||||| ||||||||||||| |||||| ||||||||| Sbjct 1039 GGACCTTTAGCTCAGTTGGTTAGAGCAGACGGCTCATAACCGTCCGGTCGTAGGTTCGAG 1098 Query 102533 ACCTGCAATGTCCAT 102547 ||| ||| |||||| Sbjct 1099 TCCTACAAGGTCCAT 1113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465499683904080